miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36204_der-mir-283:mirbase
          Length = 95

 Score =  145 bits (73), Expect = 7e-36
 Identities = 88/93 (94%)
 Strand = Plus / Plus

                                                                      
Query: 3  gattcttaaaggtaaatatcagctggtaattctgggagctatgcctgattatgaaacact 62
          |||||| |||||||||||||||||||||||||||||||||| |||| | |||||||||||
Sbjct: 3  gattctcaaaggtaaatatcagctggtaattctgggagctaagcctaaatatgaaacact 62

                                           
Query: 63 cggaatttcagttggtatcgactttttcgaatt 95
          ||||||||||||||||||||||||||| |||||
Sbjct: 63 cggaatttcagttggtatcgacttttttgaatt 95




>36430_dme-mir-283:mirbase
          Length = 100

 Score =  145 bits (73), Expect = 7e-36
 Identities = 88/93 (94%)
 Strand = Plus / Plus

                                                                       
Query: 3   gattcttaaaggtaaatatcagctggtaattctgggagctatgcctgattatgaaacact 62
           |||||| |||||||||||||||||||||||||||||||||| |||| | |||||||||||
Sbjct: 8   gattctcaaaggtaaatatcagctggtaattctgggagctaagcctaaatatgaaacact 67

                                            
Query: 63  cggaatttcagttggtatcgactttttcgaatt 95
           ||||||||||||||||||||||||||| |||||
Sbjct: 68  cggaatttcagttggtatcgacttttttgaatt 100




>36431_dme-mir-283:mirbase
          Length = 100

 Score =  145 bits (73), Expect = 7e-36
 Identities = 88/93 (94%)
 Strand = Plus / Plus

                                                                       
Query: 3   gattcttaaaggtaaatatcagctggtaattctgggagctatgcctgattatgaaacact 62
           |||||| |||||||||||||||||||||||||||||||||| |||| | |||||||||||
Sbjct: 8   gattctcaaaggtaaatatcagctggtaattctgggagctaagcctaaatatgaaacact 67

                                            
Query: 63  cggaatttcagttggtatcgactttttcgaatt 95
           ||||||||||||||||||||||||||| |||||
Sbjct: 68  cggaatttcagttggtatcgacttttttgaatt 100




>37164_dse-mir-283:mirbase
          Length = 95

 Score =  145 bits (73), Expect = 7e-36
 Identities = 88/93 (94%)
 Strand = Plus / Plus

                                                                      
Query: 3  gattcttaaaggtaaatatcagctggtaattctgggagctatgcctgattatgaaacact 62
          |||||| |||||||||||||||||||||||||||||||||| |||| | |||||||||||
Sbjct: 3  gattctcaaaggtaaatatcagctggtaattctgggagctaagcctaaatatgaaacact 62

                                           
Query: 63 cggaatttcagttggtatcgactttttcgaatt 95
          ||||||||||||||||||||||||||| |||||
Sbjct: 63 cggaatttcagttggtatcgacttttttgaatt 95




>37240_dsi-mir-283:mirbase
          Length = 95

 Score =  145 bits (73), Expect = 7e-36
 Identities = 88/93 (94%)
 Strand = Plus / Plus

                                                                      
Query: 3  gattcttaaaggtaaatatcagctggtaattctgggagctatgcctgattatgaaacact 62
          |||||| |||||||||||||||||||||||||||||||||| |||| | |||||||||||
Sbjct: 3  gattctcaaaggtaaatatcagctggtaattctgggagctaagcctaaatatgaaacact 62

                                           
Query: 63 cggaatttcagttggtatcgactttttcgaatt 95
          ||||||||||||||||||||||||||| |||||
Sbjct: 63 cggaatttcagttggtatcgacttttttgaatt 95




>37378_dvi-mir-283:mirbase
          Length = 95

 Score =  145 bits (73), Expect = 7e-36
 Identities = 88/93 (94%)
 Strand = Plus / Plus

                                                                      
Query: 3  gattcttaaaggtaaatatcagctggtaattctgggagctatgcctgattatgaaacact 62
          |||||| |||||||||||||||||||||||||||||||| |||||| | |||||||||||
Sbjct: 3  gattctcaaaggtaaatatcagctggtaattctgggagcaatgcctaaatatgaaacact 62

                                           
Query: 63 cggaatttcagttggtatcgactttttcgaatt 95
          ||||||||||||||||||||||||||| |||||
Sbjct: 63 cggaatttcagttggtatcgacttttttgaatt 95




>37533_dya-mir-283:mirbase
          Length = 95

 Score =  145 bits (73), Expect = 7e-36
 Identities = 88/93 (94%)
 Strand = Plus / Plus

                                                                      
Query: 3  gattcttaaaggtaaatatcagctggtaattctgggagctatgcctgattatgaaacact 62
          |||||| |||||||||||||||||||||||||||||||||| |||| | |||||||||||
Sbjct: 3  gattctcaaaggtaaatatcagctggtaattctgggagctaagcctaaatatgaaacact 62

                                           
Query: 63 cggaatttcagttggtatcgactttttcgaatt 95
          ||||||||||||||||||||||||||| |||||
Sbjct: 63 cggaatttcagttggtatcgacttttttgaatt 95




>37457_dwi-mir-283:mirbase
          Length = 97

 Score =  131 bits (66), Expect = 1e-31
 Identities = 89/94 (94%), Gaps = 2/94 (2%)
 Strand = Plus / Plus

                                                                      
Query: 4  attcttaaaggtaaatatcagctggtaattctgggagctatgcct-gat-tatgaaacac 61
          ||||| ||||||||||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct: 4  attctcaaaggtaaatatcagctggtaattctgggagctatgcctagatatttgaaacac 63

                                            
Query: 62 tcggaatttcagttggtatcgactttttcgaatt 95
          |||||||||||||||||||||||||||| |||||
Sbjct: 64 tcggaatttcagttggtatcgacttttttgaatt 97




>36293_dgr-mir-283:mirbase
          Length = 94

 Score =  129 bits (65), Expect = 4e-31
 Identities = 87/93 (93%), Gaps = 1/93 (1%)
 Strand = Plus / Plus

                                                                      
Query: 3  gattcttaaaggtaaatatcagctggtaattctgggagctatgcctgattatgaaacact 62
          |||||| |||||||||||||||||||||||||||||||| |||||  || ||||||||||
Sbjct: 3  gattctcaaaggtaaatatcagctggtaattctgggagcaatgccaaat-atgaaacact 61

                                           
Query: 63 cggaatttcagttggtatcgactttttcgaatt 95
          ||||||||||||||||||||||||||| |||||
Sbjct: 62 cggaatttcagttggtatcgacttttttgaatt 94




>36878_dpe-mir-283:mirbase
          Length = 94

 Score =  129 bits (65), Expect = 4e-31
 Identities = 87/93 (93%), Gaps = 1/93 (1%)
 Strand = Plus / Plus

                                                                      
Query: 3  gattcttaaaggtaaatatcagctggtaattctgggagctatgcctgattatgaaacact 62
          |||||| |||||||||||||||||||||||||||||||||| ||  ||| ||||||||||
Sbjct: 3  gattctcaaaggtaaatatcagctggtaattctgggagctaagcaagat-atgaaacact 61

                                           
Query: 63 cggaatttcagttggtatcgactttttcgaatt 95
          ||||||||||||||||||||||||||| |||||
Sbjct: 62 cggaatttcagttggtatcgacttttttgaatt 94




>36958_dps-mir-283:mirbase
          Length = 97

 Score =  129 bits (65), Expect = 4e-31
 Identities = 87/93 (93%), Gaps = 1/93 (1%)
 Strand = Plus / Plus

                                                                      
Query: 3  gattcttaaaggtaaatatcagctggtaattctgggagctatgcctgattatgaaacact 62
          |||||| |||||||||||||||||||||||||||||||||| ||  ||| ||||||||||
Sbjct: 6  gattctcaaaggtaaatatcagctggtaattctgggagctaagcaagat-atgaaacact 64

                                           
Query: 63 cggaatttcagttggtatcgactttttcgaatt 95
          ||||||||||||||||||||||||||| |||||
Sbjct: 65 cggaatttcagttggtatcgacttttttgaatt 97




>36801_dmo-mir-283:mirbase
          Length = 94

 Score =  113 bits (57), Expect = 2e-26
 Identities = 85/93 (91%), Gaps = 1/93 (1%)
 Strand = Plus / Plus

                                                                      
Query: 3  gattcttaaaggtaaatatcagctggtaattctgggagctatgcctgattatgaaacact 62
          |||||| |||||||||||||||||||||||||||||||| |||||  | |||||||||||
Sbjct: 3  gattctcaaaggtaaatatcagctggtaattctgggagcaatgcc-caatatgaaacact 61

                                           
Query: 63 cggaatttcagttggtatcgactttttcgaatt 95
          ||||||||||||||||||  ||||||| |||||
Sbjct: 62 cggaatttcagttggtatatacttttttgaatt 94




>35307_aga-mir-283:mirbase
          Length = 92

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 10 aaaggtaaatatcagctggtaattct 35
          ||||||||||||||||||||||||||
Sbjct: 9  aaaggtaaatatcagctggtaattct 34




>35213_aae-mir-283:mirbase
          Length = 103

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 10 aaaggtaaatatcagctggtaattctggg 38
          |||||| ||||||||||||||||||||||
Sbjct: 10 aaaggtcaatatcagctggtaattctggg 38




>36039_cqu-mir-283:mirbase
          Length = 110

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 10 aaaggtaaatatcagctggtaattctggg 38
          |||||| ||||||||||||||||||||||
Sbjct: 17 aaaggtcaatatcagctggtaattctggg 45




>35388_ame-mir-283:mirbase
          Length = 100

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 16 aaatatcagctggtaattctggga 39
          ||||||||||||||||||||||||
Sbjct: 21 aaatatcagctggtaattctggga 44




>35559_bmo-mir-283:mirbase
          Length = 83

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 15 taaatatcagctggtaattctggg 38
          ||||||||||||||||||||||||
Sbjct: 14 taaatatcagctggtaattctggg 37




>37590_ngi-mir-283:mirbase
          Length = 79

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 16 aaatatcagctggtaattctggga 39
          ||||||||||||||||||||||||
Sbjct: 7  aaatatcagctggtaattctggga 30




>37665_nvi-mir-283:mirbase
          Length = 102

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 16 aaatatcagctggtaattctggga 39
          ||||||||||||||||||||||||
Sbjct: 21 aaatatcagctggtaattctggga 44




>37785_tca-mir-283:mirbase
          Length = 76

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 16 aaatatcagctggtaattctggg 38
          |||||||||||||||||||||||
Sbjct: 11 aaatatcagctggtaattctggg 33




>37786_tca-mir-283:mirbase
          Length = 76

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 16 aaatatcagctggtaattctggg 38
          |||||||||||||||||||||||
Sbjct: 11 aaatatcagctggtaattctggg 33




>38764_cte-mir-216b:mirbase
          Length = 80

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 17 aatatcagctggtaattctg 36
          ||||||||||||||||||||
Sbjct: 9  aatatcagctggtaattctg 28