miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36438_dme-mir-287:mirbase
Length = 93
Score = 145 bits (73), Expect = 6e-36
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 7 ggatgtatgggtgtgtgggctctgaaattttgcacacatttacaataattgtaaatgtgt 66
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 ggatgtatgggtgtgtagggtctgaaattttgcacacatttacaataattgtaaatgtgt 69
Query: 67 tgaaaatcgtttgcacgactg 87
|||||||||||||||||||||
Sbjct: 70 tgaaaatcgtttgcacgactg 90
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 40 acacatttacaataattgtaaatgtgt 66
||||||||||||| |||||||||||||
Sbjct: 69 acacatttacaattattgtaaatgtgt 43
>37168_dse-mir-287:mirbase
Length = 71
Score = 115 bits (58), Expect = 5e-27
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 30 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgactg 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgactg 68
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 40 acacatttacaataattgtaaatgtgt 66
||||||||||||| |||||||||||||
Sbjct: 47 acacatttacaattattgtaaatgtgt 21
>37244_dsi-mir-287:mirbase
Length = 71
Score = 115 bits (58), Expect = 5e-27
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 30 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgactg 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgactg 68
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 40 acacatttacaataattgtaaatgtgt 66
||||||||||||| |||||||||||||
Sbjct: 47 acacatttacaattattgtaaatgtgt 21
>36130_dan-mir-287:mirbase
Length = 73
Score = 113 bits (57), Expect = 2e-26
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 27 tctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgact 86
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 12 tctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaact 71
Query: 87 g 87
|
Sbjct: 72 g 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 40 acacatttacaataattgtaaatgtgt 66
||||||||||||| |||||||||||||
Sbjct: 51 acacatttacaattattgtaaatgtgt 25
>36962_dps-mir-287:mirbase
Length = 80
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 19 gtgtgggctctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgttt 78
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gtgtggggcctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgttt 68
Query: 79 gcacgactg 87
|||| ||||
Sbjct: 69 gcacaactg 77
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 40 acacatttacaataattgtaaatgtgt 66
||||||||||||| |||||||||||||
Sbjct: 56 acacatttacaattattgtaaatgtgt 30
>36881_dpe-mir-287:mirbase
Length = 75
Score = 111 bits (56), Expect = 9e-26
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 19 gtgtgggctctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgttt 78
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gtgtggggcctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgttt 68
Query: 79 gcac 82
||||
Sbjct: 69 gcac 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 40 acacatttacaataattgtaaatgtgt 66
||||||||||||| |||||||||||||
Sbjct: 56 acacatttacaattattgtaaatgtgt 30
>36805_dmo-mir-287:mirbase
Length = 62
Score = 107 bits (54), Expect = 1e-24
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 29 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 60
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 40 acacatttacaataattgtaaatgtgt 66
||||||||||||| |||||||||||||
Sbjct: 44 acacatttacaattattgtaaatgtgt 18
>37382_dvi-mir-287:mirbase
Length = 68
Score = 107 bits (54), Expect = 1e-24
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 29 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 66
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 40 acacatttacaataattgtaaatgtgt 66
||||||||||||| |||||||||||||
Sbjct: 50 acacatttacaattattgtaaatgtgt 24
>37537_dya-mir-287:mirbase
Length = 77
Score = 105 bits (53), Expect = 5e-24
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 27 tctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgact 86
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 14 tctgaaattttgcacacatttacagtaattgtaaatgtgttgaaaatcgtttgcatgact 73
Query: 87 g 87
|
Sbjct: 74 g 74
>37461_dwi-mir-287:mirbase
Length = 73
Score = 103 bits (52), Expect = 2e-23
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 27 tctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 82
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 14 tctgaaattttgcacacatttacaattattgtaaatgtgttgaaaatcgtttgcac 69
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 40 acacatttacaataattgtaaatgtgt 66
|||||||||||||||||||||||||||
Sbjct: 53 acacatttacaataattgtaaatgtgt 27
>36298_dgr-mir-287-1:mirbase
Length = 73
Score = 101 bits (51), Expect = 8e-23
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 29 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgactg 87
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 12 tgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcacaactg 70
>36299_dgr-mir-287-2:mirbase
Length = 73
Score = 101 bits (51), Expect = 8e-23
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 29 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgactg 87
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 12 tgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcacaactg 70
