miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37538_dya-mir-288:mirbase
Length = 96
Score = 174 bits (88), Expect = 8e-45
Identities = 94/96 (97%)
Strand = Plus / Plus
Query: 1 cggtcatgtcgtaattagcggagctcggcgttgccggcgataattaatgacggtggtcac 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 cggtcatgtcgtaattagcggagcacggcgttgccggcgataattaatgacggtggtcac 60
Query: 61 gttggtttcatgtcgatttcatttcaggacacggcc 96
|||||||||||||||||||||||||| |||||||||
Sbjct: 61 gttggtttcatgtcgatttcatttcatgacacggcc 96
>37169_dse-mir-288:mirbase
Length = 97
Score = 168 bits (85), Expect = 5e-43
Identities = 94/97 (96%)
Strand = Plus / Plus
Query: 1 cggtcatgtcgtaattagcggagctcggcgttgccggcgataattaatgacggtggtcac 60
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 1 cggtcatgtcgtaattagcggagcacggcattgccggcgataattaatgacggtggtcac 60
Query: 61 gttggtttcatgtcgatttcatttcaggacacggccg 97
|||||||||||||||||||||||||| ||||||||||
Sbjct: 61 gttggtttcatgtcgatttcatttcatgacacggccg 97
>37245_dsi-mir-288:mirbase
Length = 97
Score = 168 bits (85), Expect = 5e-43
Identities = 94/97 (96%)
Strand = Plus / Plus
Query: 1 cggtcatgtcgtaattagcggagctcggcgttgccggcgataattaatgacggtggtcac 60
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 1 cggtcatgtcgtaattagcggagcacggcattgccggcgataattaatgacggtggtcac 60
Query: 61 gttggtttcatgtcgatttcatttcaggacacggccg 97
|||||||||||||||||||||||||| ||||||||||
Sbjct: 61 gttggtttcatgtcgatttcatttcatgacacggccg 97
>36439_dme-mir-288:mirbase
Length = 97
Score = 153 bits (77), Expect = 3e-38
Identities = 89/93 (95%)
Strand = Plus / Plus
Query: 5 catgtcgtaattagcggagctcggcgttgccggcgataattaatgacggtggtcacgttg 64
|||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||
Sbjct: 5 catgtcgtaattagcggagcacggcatcgccggcgataattaatgacggtggtcacgttg 64
Query: 65 gtttcatgtcgatttcatttcaggacacggccg 97
|||||||||||||||||||||| ||||||||||
Sbjct: 65 gtttcatgtcgatttcatttcatgacacggccg 97
>36963_dps-mir-288:mirbase
Length = 96
Score = 129 bits (65), Expect = 4e-31
Identities = 86/93 (92%)
Strand = Plus / Plus
Query: 5 catgtcgtaattagcggagctcggcgttgccggcgataattaatgacggtggtcacgttg 64
||||||||||||||| | | | ||||||||||||||||||||||||| |||||||||||
Sbjct: 4 catgtcgtaattagcagggtacagcgttgccggcgataattaatgacgttggtcacgttg 63
Query: 65 gtttcatgtcgatttcatttcaggacacggccg 97
|||||||||||||||||||||| ||||||||||
Sbjct: 64 gtttcatgtcgatttcatttcatgacacggccg 96
>36806_dmo-mir-288:mirbase
Length = 96
Score = 123 bits (62), Expect = 2e-29
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 8 gtcgtaattagcggagctcggcgttgccggcgataattaatgacggtggtcacgttggtt 67
|||||||||||| | || | ||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 7 gtcgtaattagctgtgcacagcgttgctggcgataattaatgacgttggtcacgttggtt 66
Query: 68 tcatgtcgatttcatttcaggacacggccg 97
||||||||||||||||||| ||||||||||
Sbjct: 67 tcatgtcgatttcatttcatgacacggccg 96
>36882_dpe-mir-288:mirbase
Length = 96
Score = 121 bits (61), Expect = 1e-28
Identities = 85/93 (91%)
Strand = Plus / Plus
Query: 5 catgtcgtaattagcggagctcggcgttgccggcgataattaatgacggtggtcacgttg 64
||||||||||||||| | | | ||||||||||||| ||||||||||| |||||||||||
Sbjct: 4 catgtcgtaattagcagggtacagcgttgccggcgaaaattaatgacgttggtcacgttg 63
Query: 65 gtttcatgtcgatttcatttcaggacacggccg 97
|||||||||||||||||||||| ||||||||||
Sbjct: 64 gtttcatgtcgatttcatttcatgacacggccg 96
>36131_dan-mir-288:mirbase
Length = 92
Score = 119 bits (60), Expect = 4e-28
Identities = 84/92 (91%)
Strand = Plus / Plus
Query: 5 catgtcgtaattagcggagctcggcgttgccggcgataattaatgacggtggtcacgttg 64
||||||||||||||| | || | | |||||||||||||||||||||| |||||||||||
Sbjct: 1 catgtcgtaattagcagggcacagaattgccggcgataattaatgacgttggtcacgttg 60
Query: 65 gtttcatgtcgatttcatttcaggacacggcc 96
|||||||||||||||||||||| |||||||||
Sbjct: 61 gtttcatgtcgatttcatttcatgacacggcc 92
>37462_dwi-mir-288:mirbase
Length = 94
Score = 109 bits (55), Expect = 4e-25
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 35 cggcgataattaatgacggtggtcacgttggtttcatgtcgatttcatttcaggacacgg 94
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 32 cggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacgg 91
Query: 95 ccg 97
|||
Sbjct: 92 ccg 94
>36300_dgr-mir-288:mirbase
Length = 96
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 36 ggcgataattaatgacggtggtcacgttggtttcatgtcgatttcatttcaggacacggc 95
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 35 ggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacggc 94
Query: 96 cg 97
||
Sbjct: 95 cg 96
>37383_dvi-mir-288:mirbase
Length = 97
Score = 107 bits (54), Expect = 1e-24
Identities = 81/90 (90%)
Strand = Plus / Plus
Query: 8 gtcgtaattagcggagctcggcgttgccggcgataattaatgacggtggtcacgttggtt 67
|||||||||||| | || | |||||| |||||||||||||||| ||||||||||||||
Sbjct: 8 gtcgtaattagctgtgcacaacgttgctggcgataattaatgactttggtcacgttggtt 67
Query: 68 tcatgtcgatttcatttcaggacacggccg 97
||||||||||||||||||| ||||||||||
Sbjct: 68 tcatgtcgatttcatttcatgacacggccg 97
