miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37546_dya-mir-310:mirbase
Length = 88
Score = 143 bits (72), Expect = 2e-35
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 1 acacaaatatttgcaggacgggtcgtgtgtcaatgtattgatctcttagctatattgcac 60
||||||| ||||||||||||||||||||| || ||||||||| |||||||||||||||||
Sbjct: 1 acacaaacatttgcaggacgggtcgtgtggcagtgtattgatttcttagctatattgcac 60
Query: 61 acttcccgccctttaaatgtccagtgtt 88
||||||||||||||||||||||||||||
Sbjct: 61 acttcccgccctttaaatgtccagtgtt 88
>36218_der-mir-310b:mirbase
Length = 88
Score = 135 bits (68), Expect = 6e-33
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 1 acacaaatatttgcaggacgggtcgtgtgtcaatgtattgatctcttagctatattgcac 60
|||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||
Sbjct: 1 acacaaatatttgcaggacgggtcgtgtgttaatgtataaatctattagctatattgcac 60
Query: 61 acttcccgccctttaaatgtccagtgtt 88
||||||||| ||||||||||||||||||
Sbjct: 61 acttcccgctctttaaatgtccagtgtt 88
>36457_dme-mir-310:mirbase
Length = 89
Score = 111 bits (56), Expect = 8e-26
Identities = 74/80 (92%)
Strand = Plus / Plus
Query: 9 atttgcaggacgggtcgtgtgtcaatgtattgatctcttagctatattgcacacttcccg 68
||||||||| |||||||||||||| |||||| || |||||||||||||||||||||||||
Sbjct: 10 atttgcagggcgggtcgtgtgtcagtgtatttatatcttagctatattgcacacttcccg 69
Query: 69 ccctttaaatgtccagtgtt 88
|||||||||||||| ||||
Sbjct: 70 gcctttaaatgtccaatgtt 89
>36458_dme-mir-310:mirbase
Length = 89
Score = 111 bits (56), Expect = 8e-26
Identities = 74/80 (92%)
Strand = Plus / Plus
Query: 9 atttgcaggacgggtcgtgtgtcaatgtattgatctcttagctatattgcacacttcccg 68
||||||||| |||||||||||||| |||||| || |||||||||||||||||||||||||
Sbjct: 10 atttgcagggcgggtcgtgtgtcagtgtatttatatcttagctatattgcacacttcccg 69
Query: 69 ccctttaaatgtccagtgtt 88
|||||||||||||| ||||
Sbjct: 70 gcctttaaatgtccaatgtt 89
>37177_dse-mir-310:mirbase
Length = 89
Score = 103 bits (52), Expect = 2e-23
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 9 atttgcaggacgggtcgtgtgtcaatgtattgatctcttagctatattgcacacttcccg 68
|||||||||||||||||||||||| |||||| | ||||| |||||||||||||||||||
Sbjct: 10 atttgcaggacgggtcgtgtgtcagtgtatttacttcttaactatattgcacacttcccg 69
Query: 69 ccctttaaatgtccagtgtt 88
|||||||||||||| ||||
Sbjct: 70 gcctttaaatgtccaatgtt 89
>37253_dsi-mir-310:mirbase
Length = 89
Score = 103 bits (52), Expect = 2e-23
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 9 atttgcaggacgggtcgtgtgtcaatgtattgatctcttagctatattgcacacttcccg 68
|||||||||||||||||||||||| | |||| | |||||||||||||||||||||||||
Sbjct: 10 atttgcaggacgggtcgtgtgtcagtatatttacttcttagctatattgcacacttcccg 69
Query: 69 ccctttaaatgtccagtgtt 88
|||||||||||||| ||||
Sbjct: 70 gcctttaaatgtccaatgtt 89
