miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36217_der-mir-310a:mirbase
Length = 88
Score = 135 bits (68), Expect = 6e-33
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 1 acacaaatatttgcaggacgggtcgtgtgttaatgtataaatctattagctatattgcac 60
|||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||
Sbjct: 1 acacaaatatttgcaggacgggtcgtgtgtcaatgtattgatctcttagctatattgcac 60
Query: 61 acttcccgctctttaaatgtccagtgtt 88
||||||||| ||||||||||||||||||
Sbjct: 61 acttcccgccctttaaatgtccagtgtt 88
>37546_dya-mir-310:mirbase
Length = 88
Score = 103 bits (52), Expect = 2e-23
Identities = 79/88 (89%)
Strand = Plus / Plus
Query: 1 acacaaatatttgcaggacgggtcgtgtgttaatgtataaatctattagctatattgcac 60
||||||| ||||||||||||||||||||| | ||||| || | |||||||||||||||
Sbjct: 1 acacaaacatttgcaggacgggtcgtgtggcagtgtattgatttcttagctatattgcac 60
Query: 61 acttcccgctctttaaatgtccagtgtt 88
||||||||| ||||||||||||||||||
Sbjct: 61 acttcccgccctttaaatgtccagtgtt 88
>36457_dme-mir-310:mirbase
Length = 89
Score = 79.8 bits (40), Expect = 3e-16
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 9 atttgcaggacgggtcgtgtgttaatgtataaatctattagctatattgcacacttcccg 68
||||||||| |||||||||||| | ||||| || | |||||||||||||||||||||||
Sbjct: 10 atttgcagggcgggtcgtgtgtcagtgtatttatatcttagctatattgcacacttcccg 69
Query: 69 ctctttaaatgtccagtgtt 88
||||||||||||| ||||
Sbjct: 70 gcctttaaatgtccaatgtt 89
>36458_dme-mir-310:mirbase
Length = 89
Score = 79.8 bits (40), Expect = 3e-16
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 9 atttgcaggacgggtcgtgtgttaatgtataaatctattagctatattgcacacttcccg 68
||||||||| |||||||||||| | ||||| || | |||||||||||||||||||||||
Sbjct: 10 atttgcagggcgggtcgtgtgtcagtgtatttatatcttagctatattgcacacttcccg 69
Query: 69 ctctttaaatgtccagtgtt 88
||||||||||||| ||||
Sbjct: 70 gcctttaaatgtccaatgtt 89
>37177_dse-mir-310:mirbase
Length = 89
Score = 71.9 bits (36), Expect = 7e-14
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 9 atttgcaggacgggtcgtgtgttaatgtataaatctattagctatattgcacacttcccg 68
|||||||||||||||||||||| | ||||| | | ||| |||||||||||||||||||
Sbjct: 10 atttgcaggacgggtcgtgtgtcagtgtatttacttcttaactatattgcacacttcccg 69
Query: 69 ctctttaaatgtccagtgtt 88
||||||||||||| ||||
Sbjct: 70 gcctttaaatgtccaatgtt 89
>37253_dsi-mir-310:mirbase
Length = 89
Score = 71.9 bits (36), Expect = 7e-14
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 9 atttgcaggacgggtcgtgtgttaatgtataaatctattagctatattgcacacttcccg 68
|||||||||||||||||||||| | | ||| | | |||||||||||||||||||||||
Sbjct: 10 atttgcaggacgggtcgtgtgtcagtatatttacttcttagctatattgcacacttcccg 69
Query: 69 ctctttaaatgtccagtgtt 88
||||||||||||| ||||
Sbjct: 70 gcctttaaatgtccaatgtt 89
