miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36219_der-mir-311a:mirbase
Length = 80
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 tagatagtttttcggacggtatctgcgtcaatatttccttgttagaatatattgcacatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tagatagtttttcggacggtatctgcgtcaatatttccttgttagaatatattgcacatt 60
Query: 61 caccagcctgaaaatatcaa 80
|||| |||||||||||||||
Sbjct: 61 caccggcctgaaaatatcaa 80
>37547_dya-mir-311a:mirbase
Length = 80
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 tagatagtttttcggacggtatctgcgtcaatatttccttgttagaatatattgcacatt 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tagatagttttgcggacggtatctgcgtcaatatttccttgttagaatatattgcacatt 60
Query: 61 caccagcctgaaaatatcaa 80
|||| |||||||||||||||
Sbjct: 61 caccggcctgaaaatatcaa 80
>37178_dse-mir-311:mirbase
Length = 84
Score = 95.6 bits (48), Expect = 4e-21
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 1 tagatagtttttcggacggtatctgcgtcaatatttccttgttagaatatattgcacatt 60
|||||| ||||||||||||||| || |||||| ||| ||| || ||||||||||||||||
Sbjct: 3 tagataatttttcggacggtatatgagtcaatgttttctttttcgaatatattgcacatt 62
Query: 61 caccagcctgaaaatatcaa 80
|||| |||||||||||||||
Sbjct: 63 caccggcctgaaaatatcaa 82
>36459_dme-mir-311:mirbase
Length = 84
Score = 81.8 bits (41), Expect = 7e-17
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 8 tttttcggacggtatctgcgtcaatatttccttgttagaatatattgcacattcaccagc 67
||||||||||||||| || || |||||||| || | |||||||||||||||||||| ||
Sbjct: 10 tttttcggacggtatatgggttaatatttcatttgtcgaatatattgcacattcaccggc 69
Query: 68 ctgaaaatatcaa 80
|||||||||||||
Sbjct: 70 ctgaaaatatcaa 82
>36460_dme-mir-311:mirbase
Length = 84
Score = 81.8 bits (41), Expect = 7e-17
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 8 tttttcggacggtatctgcgtcaatatttccttgttagaatatattgcacattcaccagc 67
||||||||||||||| || || |||||||| || | |||||||||||||||||||| ||
Sbjct: 10 tttttcggacggtatatgggttaatatttcatttgtcgaatatattgcacattcaccggc 69
Query: 68 ctgaaaatatcaa 80
|||||||||||||
Sbjct: 70 ctgaaaatatcaa 82
>37254_dsi-mir-311:mirbase
Length = 86
Score = 71.9 bits (36), Expect = 6e-14
Identities = 66/75 (88%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 8 tttttcggacggtatctgcgtcaatatttccttgtta--gaatatattgcacattcacca 65
||||||||||||||| || |||||||||| || || ||||||||||||||||||||
Sbjct: 10 tttttcggacggtatatgagtcaatattttttttttttcgaatatattgcacattcaccg 69
Query: 66 gcctgaaaatatcaa 80
|||||||||||||||
Sbjct: 70 gcctgaaaatatcaa 84
>36220_der-mir-311b-1:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 50 tattgcacattcaccagcctgaaa 73
|||||||||||| |||||||||||
Sbjct: 48 tattgcacattccccagcctgaaa 71
>36221_der-mir-311b-2:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 50 tattgcacattcaccagcctgaaa 73
|||||||||||| |||||||||||
Sbjct: 48 tattgcacattccccagcctgaaa 71
>37548_dya-mir-311b:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 50 tattgcacattcaccagcctgaaa 73
|||||||||||| |||||||||||
Sbjct: 50 tattgcacattccccagcctgaaa 73
