miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36223_der-mir-312-1:mirbase
Length = 66
Score = 79.8 bits (40), Expect = 2e-16
Identities = 61/69 (88%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 1 gcttcggttcgtaccaggagcaattctgcannnnnnnnaagctagtattgcacttgagac 60
|||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 gcttcggttcgtaccaggagcaattctgcattttt---aagctagtattgcacttgagac 57
Query: 61 ggccggatt 69
|||||||||
Sbjct: 58 ggccggatt 66
>37549_dya-mir-312:mirbase
Length = 67
Score = 71.9 bits (36), Expect = 5e-14
Identities = 60/69 (86%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 1 gcttcggttcgtaccaggagcaattctgcannnnnnnnaagctagtattgcacttgagac 60
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 gcttcggttcgtcccaggagcaattctgcactatta--aagctagtattgcacttgagac 58
Query: 61 ggccggatt 69
|||||||||
Sbjct: 59 ggccggatt 67
>36461_dme-mir-312:mirbase
Length = 66
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 42 ctagtattgcacttgagacggccggatt 69
||||||||||||||||||||||| ||||
Sbjct: 39 ctagtattgcacttgagacggcctgatt 66
>36462_dme-mir-312:mirbase
Length = 66
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 42 ctagtattgcacttgagacggccggatt 69
||||||||||||||||||||||| ||||
Sbjct: 39 ctagtattgcacttgagacggcctgatt 66
>36142_dan-mir-312:mirbase
Length = 57
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 44 agtattgcacttgagacggcc 64
|||||||||||||||||||||
Sbjct: 37 agtattgcacttgagacggcc 57
>37179_dse-mir-312:mirbase
Length = 66
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 45 gtattgcacttgagacggccg 65
|||||||||||||||||||||
Sbjct: 42 gtattgcacttgagacggccg 62
>37255_dsi-mir-312:mirbase
Length = 66
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 45 gtattgcacttgagacggccg 65
|||||||||||||||||||||
Sbjct: 42 gtattgcacttgagacggccg 62
