miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36247_dgr-mir-6-2:mirbase
          Length = 79

 Score =  157 bits (79), Expect = 1e-39
 Identities = 79/79 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  taaccacagggaactgctgctgctgatatacaaccatatttatacacgactatatcacag 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  taaccacagggaactgctgctgctgatatacaaccatatttatacacgactatatcacag 60

                             
Query: 61 tggctgttctttttggttg 79
          |||||||||||||||||||
Sbjct: 61 tggctgttctttttggttg 79




>36339_dme-mir-6-2:mirbase
          Length = 74

 Score = 61.9 bits (31), Expect = 6e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 49 actatatcacagtggctgttctttttggttg 79
          |||||||||||||||||||||||||||||||
Sbjct: 44 actatatcacagtggctgttctttttggttg 74




>36340_dme-mir-6-2:mirbase
          Length = 74

 Score = 61.9 bits (31), Expect = 6e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 49 actatatcacagtggctgttctttttggttg 79
          |||||||||||||||||||||||||||||||
Sbjct: 44 actatatcacagtggctgttctttttggttg 74




>36162_der-mir-6-2:mirbase
          Length = 73

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 50 ctatatcacagtggctgttctttttggttg 79
          ||||||||||||||||||||||||||||||
Sbjct: 44 ctatatcacagtggctgttctttttggttg 73




>36760_dmo-mir-6-2:mirbase
          Length = 81

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 50 ctatatcacagtggctgttctttttggttg 79
          ||||||||||||||||||||||||||||||
Sbjct: 52 ctatatcacagtggctgttctttttggttg 81



 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 1  taaccacagggaactgctgctgctgatatac 31
          ||||| |||||||||||||||||||||||||
Sbjct: 1  taaccgcagggaactgctgctgctgatatac 31




>37122_dse-mir-6-2:mirbase
          Length = 74

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 50 ctatatcacagtggctgttctttttggttg 79
          ||||||||||||||||||||||||||||||
Sbjct: 45 ctatatcacagtggctgttctttttggttg 74




>37200_dsi-mir-6-2:mirbase
          Length = 74

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 50 ctatatcacagtggctgttctttttggttg 79
          ||||||||||||||||||||||||||||||
Sbjct: 45 ctatatcacagtggctgttctttttggttg 74




>37490_dya-mir-6-2:mirbase
          Length = 74

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 50 ctatatcacagtggctgttctttttggttg 79
          ||||||||||||||||||||||||||||||
Sbjct: 45 ctatatcacagtggctgttctttttggttg 74




>36834_dpe-mir-6-3:mirbase
          Length = 83

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 50 ctatatcacagtggctgttctttttggtt 78
          |||||||||||||||||||||||||||||
Sbjct: 55 ctatatcacagtggctgttctttttggtt 83




>36909_dps-mir-6-2:mirbase
          Length = 83

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 50 ctatatcacagtggctgttctttttggtt 78
          |||||||||||||||||||||||||||||
Sbjct: 55 ctatatcacagtggctgttctttttggtt 83




>37411_dwi-mir-6-2:mirbase
          Length = 94

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 50 ctatatcacagtggctgttctttttggtt 78
          |||||||||||||||||||||||||||||
Sbjct: 66 ctatatcacagtggctgttctttttggtt 94




>37336_dvi-mir-6-2:mirbase
          Length = 80

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 52 atatcacagtggctgttctttttggttg 79
          ||||||||||||||||||||||||||||
Sbjct: 53 atatcacagtggctgttctttttggttg 80



 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 1  taaccacagggaactgctgctgctgatatac 31
          ||||| |||||||||||||||||||||||||
Sbjct: 1  taaccgcagggaactgctgctgctgatatac 31




>36084_dan-mir-6-2:mirbase
          Length = 84

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 50 ctatatcacagtggctgttctttttgg 76
          |||||||||||||||||||||||||||
Sbjct: 55 ctatatcacagtggctgttctttttgg 81



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 7  cagggaactgctgctgctgatata 30
          |||||||||| |||||||||||||
Sbjct: 7  cagggaactgttgctgctgatata 30




>36083_dan-mir-6-1:mirbase
          Length = 68

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 50 ctatatcacagtggctgttctttttg 75
          ||||||||||||||||||||||||||
Sbjct: 40 ctatatcacagtggctgttctttttg 65




>36161_der-mir-6-1:mirbase
          Length = 71

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 50 ctatatcacagtggctgttctttttg 75
          ||||||||||||||||||||||||||
Sbjct: 44 ctatatcacagtggctgttctttttg 69




>36246_dgr-mir-6-1:mirbase
          Length = 70

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 50 ctatatcacagtggctgttctttttg 75
          ||||||||||||||||||||||||||
Sbjct: 43 ctatatcacagtggctgttctttttg 68




>36249_dgr-mir-6-4:mirbase
          Length = 70

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 50 ctatatcacagtggctgttctttttg 75
          ||||||||||||||||||||||||||
Sbjct: 43 ctatatcacagtggctgttctttttg 68




>36337_dme-mir-6-1:mirbase
          Length = 82

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 50 ctatatcacagtggctgttctttttg 75
          ||||||||||||||||||||||||||
Sbjct: 49 ctatatcacagtggctgttctttttg 74




>36338_dme-mir-6-1:mirbase
          Length = 82

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 50 ctatatcacagtggctgttctttttg 75
          ||||||||||||||||||||||||||
Sbjct: 49 ctatatcacagtggctgttctttttg 74




>37121_dse-mir-6-1:mirbase
          Length = 71

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 50 ctatatcacagtggctgttctttttg 75
          ||||||||||||||||||||||||||
Sbjct: 44 ctatatcacagtggctgttctttttg 69




>37199_dsi-mir-6-1:mirbase
          Length = 71

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 50 ctatatcacagtggctgttctttttg 75
          ||||||||||||||||||||||||||
Sbjct: 44 ctatatcacagtggctgttctttttg 69




>37335_dvi-mir-6-1:mirbase
          Length = 70

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 50 ctatatcacagtggctgttctttttg 75
          ||||||||||||||||||||||||||
Sbjct: 43 ctatatcacagtggctgttctttttg 68




>37489_dya-mir-6-1:mirbase
          Length = 71

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 50 ctatatcacagtggctgttctttttg 75
          ||||||||||||||||||||||||||
Sbjct: 44 ctatatcacagtggctgttctttttg 69




>36759_dmo-mir-6-1:mirbase
          Length = 66

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 51 tatatcacagtggctgttctttttg 75
          |||||||||||||||||||||||||
Sbjct: 40 tatatcacagtggctgttctttttg 64




>36832_dpe-mir-6-1:mirbase
          Length = 69

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 51 tatatcacagtggctgttctttttg 75
          |||||||||||||||||||||||||
Sbjct: 43 tatatcacagtggctgttctttttg 67




>36908_dps-mir-6-1:mirbase
          Length = 80

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 51 tatatcacagtggctgttctttttg 75
          |||||||||||||||||||||||||
Sbjct: 48 tatatcacagtggctgttctttttg 72




>36085_dan-mir-6-3:mirbase
          Length = 76

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 51 tatatcacagtggctgttcttttt 74
          ||||||||||||||||||||||||
Sbjct: 47 tatatcacagtggctgttcttttt 70




>36163_der-mir-6-3:mirbase
          Length = 80

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 51 tatatcacagtggctgttcttttt 74
          ||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74




>36248_dgr-mir-6-3:mirbase
          Length = 74

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 51 tatatcacagtggctgttcttttt 74
          ||||||||||||||||||||||||
Sbjct: 48 tatatcacagtggctgttcttttt 71




>36251_dgr-mir-6-6:mirbase
          Length = 74

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 51 tatatcacagtggctgttcttttt 74
          ||||||||||||||||||||||||
Sbjct: 48 tatatcacagtggctgttcttttt 71




>36341_dme-mir-6-3:mirbase
          Length = 80

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 51 tatatcacagtggctgttcttttt 74
          ||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74




>36342_dme-mir-6-3:mirbase
          Length = 80

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 51 tatatcacagtggctgttcttttt 74
          ||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74




>36761_dmo-mir-6-3:mirbase
          Length = 78

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 51 tatatcacagtggctgttcttttt 74
          ||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttcttttt 73




>36833_dpe-mir-6-2:mirbase
          Length = 80

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 51 tatatcacagtggctgttcttttt 74
          ||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74




>36910_dps-mir-6-3:mirbase
          Length = 80

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 51 tatatcacagtggctgttcttttt 74
          ||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74




>37123_dse-mir-6-3:mirbase
          Length = 80

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 51 tatatcacagtggctgttcttttt 74
          ||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74




>37201_dsi-mir-6-3:mirbase
          Length = 80

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 51 tatatcacagtggctgttcttttt 74
          ||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74




>37337_dvi-mir-6-3:mirbase
          Length = 73

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 51 tatatcacagtggctgttcttttt 74
          ||||||||||||||||||||||||
Sbjct: 47 tatatcacagtggctgttcttttt 70




>37410_dwi-mir-6-1:mirbase
          Length = 69

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 52 atatcacagtggctgttctttttg 75
          ||||||||||||||||||||||||
Sbjct: 44 atatcacagtggctgttctttttg 67




>37412_dwi-mir-6-3:mirbase
          Length = 76

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 51 tatatcacagtggctgttcttttt 74
          ||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttcttttt 73




>37491_dya-mir-6-3:mirbase
          Length = 80

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 51 tatatcacagtggctgttcttttt 74
          ||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74