miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36248_dgr-mir-6-3:mirbase
          Length = 74

 Score =  147 bits (74), Expect = 1e-36
 Identities = 74/74 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaggaagagaacgctcgctgctgatgtagttcatgattcaaatattttatatcacagtgg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aaggaagagaacgctcgctgctgatgtagttcatgattcaaatattttatatcacagtgg 60

                        
Query: 61 ctgttcttttttgt 74
          ||||||||||||||
Sbjct: 61 ctgttcttttttgt 74




>36833_dpe-mir-6-2:mirbase
          Length = 80

 Score = 69.9 bits (35), Expect = 2e-13
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                      
Query: 4  gaagagaacgctcgctgctgatgtagttcatgattcaaatattttatatcacagtggctg 63
          |||| ||||| | ||||||||||||||||| | |||  | | ||||||||||||||||||
Sbjct: 7  gaagggaacggttgctgctgatgtagttcaagtttcgcacaatttatatcacagtggctg 66

                     
Query: 64 ttcttttttgt 74
          |||||||||||
Sbjct: 67 ttcttttttgt 77




>36910_dps-mir-6-3:mirbase
          Length = 80

 Score = 61.9 bits (31), Expect = 6e-11
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                      
Query: 4  gaagagaacgctcgctgctgatgtagttcatgattcaaatattttatatcacagtggctg 63
          |||| ||||| | ||||||||||||||||| | ||   | | ||||||||||||||||||
Sbjct: 7  gaagggaacggttgctgctgatgtagttcaagttttgcacaatttatatcacagtggctg 66

                     
Query: 64 ttcttttttgt 74
          |||||||||||
Sbjct: 67 ttcttttttgt 77




>36085_dan-mir-6-3:mirbase
          Length = 76

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 61/71 (85%), Gaps = 4/71 (5%)
 Strand = Plus / Plus

                                                                      
Query: 4  gaagagaacgctcgctgctgatgtagttcatgattcaaatattttatatcacagtggctg 63
          |||| ||||| |||||||||||||||||    ||||  ||  ||||||||||||||||||
Sbjct: 7  gaagggaacggtcgctgctgatgtagtt----attcgcatcatttatatcacagtggctg 62

                     
Query: 64 ttcttttttgt 74
          |||||||||||
Sbjct: 63 ttcttttttgt 73




>36163_der-mir-6-3:mirbase
          Length = 80

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 46 tttatatcacagtggctgttcttttttgt 74
          |||||||||||||||||||||||||||||
Sbjct: 49 tttatatcacagtggctgttcttttttgt 77




>36341_dme-mir-6-3:mirbase
          Length = 80

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 46 tttatatcacagtggctgttcttttttgt 74
          |||||||||||||||||||||||||||||
Sbjct: 49 tttatatcacagtggctgttcttttttgt 77




>36342_dme-mir-6-3:mirbase
          Length = 80

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 46 tttatatcacagtggctgttcttttttgt 74
          |||||||||||||||||||||||||||||
Sbjct: 49 tttatatcacagtggctgttcttttttgt 77




>36761_dmo-mir-6-3:mirbase
          Length = 78

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 46 tttatatcacagtggctgttcttttttgt 74
          |||||||||||||||||||||||||||||
Sbjct: 48 tttatatcacagtggctgttcttttttgt 76




>37123_dse-mir-6-3:mirbase
          Length = 80

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 46 tttatatcacagtggctgttcttttttgt 74
          |||||||||||||||||||||||||||||
Sbjct: 49 tttatatcacagtggctgttcttttttgt 77




>37201_dsi-mir-6-3:mirbase
          Length = 80

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 46 tttatatcacagtggctgttcttttttgt 74
          |||||||||||||||||||||||||||||
Sbjct: 49 tttatatcacagtggctgttcttttttgt 77




>37337_dvi-mir-6-3:mirbase
          Length = 73

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 46 tttatatcacagtggctgttcttttttgt 74
          |||||||||||||||||||||||||||||
Sbjct: 45 tttatatcacagtggctgttcttttttgt 73



 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 1  aaggaagagaacgctcgctgctgatgtagt 30
          ||||||||||||| |||||| |||||||||
Sbjct: 1  aaggaagagaacgttcgctgttgatgtagt 30




>37412_dwi-mir-6-3:mirbase
          Length = 76

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 48 tatatcacagtggctgttcttttttgt 74
          |||||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttcttttttgt 76




>37491_dya-mir-6-3:mirbase
          Length = 80

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 46 tttatatcacagtggctgttctttttt 72
          |||||||||||||||||||||||||||
Sbjct: 49 tttatatcacagtggctgttctttttt 75




>36759_dmo-mir-6-1:mirbase
          Length = 66

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 46 tttatatcacagtggctgttcttttt 71
          ||||||||||||||||||||||||||
Sbjct: 38 tttatatcacagtggctgttcttttt 63




>36083_dan-mir-6-1:mirbase
          Length = 68

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 tatatcacagtggctgttcttttt 71
          ||||||||||||||||||||||||
Sbjct: 41 tatatcacagtggctgttcttttt 64




>36084_dan-mir-6-2:mirbase
          Length = 84

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 tatatcacagtggctgttcttttt 71
          ||||||||||||||||||||||||
Sbjct: 56 tatatcacagtggctgttcttttt 79




>36161_der-mir-6-1:mirbase
          Length = 71

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 tatatcacagtggctgttcttttt 71
          ||||||||||||||||||||||||
Sbjct: 45 tatatcacagtggctgttcttttt 68




>36162_der-mir-6-2:mirbase
          Length = 73

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 tatatcacagtggctgttcttttt 71
          ||||||||||||||||||||||||
Sbjct: 45 tatatcacagtggctgttcttttt 68




>36246_dgr-mir-6-1:mirbase
          Length = 70

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 tatatcacagtggctgttcttttt 71
          ||||||||||||||||||||||||
Sbjct: 44 tatatcacagtggctgttcttttt 67




>36247_dgr-mir-6-2:mirbase
          Length = 79

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 tatatcacagtggctgttcttttt 71
          ||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74




>36249_dgr-mir-6-4:mirbase
          Length = 70

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 tatatcacagtggctgttcttttt 71
          ||||||||||||||||||||||||
Sbjct: 44 tatatcacagtggctgttcttttt 67




>36250_dgr-mir-6-5:mirbase
          Length = 79

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 tatatcacagtggctgttcttttt 71
          ||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74




>36337_dme-mir-6-1:mirbase
          Length = 82

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 tatatcacagtggctgttcttttt 71
          ||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttcttttt 73




>36338_dme-mir-6-1:mirbase
          Length = 82

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 tatatcacagtggctgttcttttt 71
          ||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttcttttt 73




>36339_dme-mir-6-2:mirbase
          Length = 74

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 tatatcacagtggctgttcttttt 71
          ||||||||||||||||||||||||
Sbjct: 46 tatatcacagtggctgttcttttt 69




>36340_dme-mir-6-2:mirbase
          Length = 74

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 tatatcacagtggctgttcttttt 71
          ||||||||||||||||||||||||
Sbjct: 46 tatatcacagtggctgttcttttt 69




>36760_dmo-mir-6-2:mirbase
          Length = 81

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 tatatcacagtggctgttcttttt 71
          ||||||||||||||||||||||||
Sbjct: 53 tatatcacagtggctgttcttttt 76




>36832_dpe-mir-6-1:mirbase
          Length = 69

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 tatatcacagtggctgttcttttt 71
          ||||||||||||||||||||||||
Sbjct: 43 tatatcacagtggctgttcttttt 66




>36834_dpe-mir-6-3:mirbase
          Length = 83

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 tatatcacagtggctgttcttttt 71
          ||||||||||||||||||||||||
Sbjct: 56 tatatcacagtggctgttcttttt 79




>36908_dps-mir-6-1:mirbase
          Length = 80

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 tatatcacagtggctgttcttttt 71
          ||||||||||||||||||||||||
Sbjct: 48 tatatcacagtggctgttcttttt 71




>36909_dps-mir-6-2:mirbase
          Length = 83

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 tatatcacagtggctgttcttttt 71
          ||||||||||||||||||||||||
Sbjct: 56 tatatcacagtggctgttcttttt 79




>37121_dse-mir-6-1:mirbase
          Length = 71

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 tatatcacagtggctgttcttttt 71
          ||||||||||||||||||||||||
Sbjct: 45 tatatcacagtggctgttcttttt 68




>37122_dse-mir-6-2:mirbase
          Length = 74

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 tatatcacagtggctgttcttttt 71
          ||||||||||||||||||||||||
Sbjct: 46 tatatcacagtggctgttcttttt 69




>37199_dsi-mir-6-1:mirbase
          Length = 71

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 tatatcacagtggctgttcttttt 71
          ||||||||||||||||||||||||
Sbjct: 45 tatatcacagtggctgttcttttt 68




>37200_dsi-mir-6-2:mirbase
          Length = 74

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 tatatcacagtggctgttcttttt 71
          ||||||||||||||||||||||||
Sbjct: 46 tatatcacagtggctgttcttttt 69




>37335_dvi-mir-6-1:mirbase
          Length = 70

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 tatatcacagtggctgttcttttt 71
          ||||||||||||||||||||||||
Sbjct: 44 tatatcacagtggctgttcttttt 67




>37410_dwi-mir-6-1:mirbase
          Length = 69

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 44 attttatatcacagtggctgttcttttt 71
          |||| |||||||||||||||||||||||
Sbjct: 39 atttcatatcacagtggctgttcttttt 66




>37411_dwi-mir-6-2:mirbase
          Length = 94

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 tatatcacagtggctgttcttttt 71
          ||||||||||||||||||||||||
Sbjct: 67 tatatcacagtggctgttcttttt 90




>37489_dya-mir-6-1:mirbase
          Length = 71

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 tatatcacagtggctgttcttttt 71
          ||||||||||||||||||||||||
Sbjct: 45 tatatcacagtggctgttcttttt 68




>37490_dya-mir-6-2:mirbase
          Length = 74

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 tatatcacagtggctgttcttttt 71
          ||||||||||||||||||||||||
Sbjct: 46 tatatcacagtggctgttcttttt 69




>37336_dvi-mir-6-2:mirbase
          Length = 80

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 49 atatcacagtggctgttcttttt 71
          |||||||||||||||||||||||
Sbjct: 53 atatcacagtggctgttcttttt 75