miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>37339_dvi-mir-8:mirbase
          Length = 91

 Score =  180 bits (91), Expect = 1e-46
 Identities = 91/91 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaggacatctgttcacatcttaccgggcagcattagattcttgatttaaataattctaat 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aaggacatctgttcacatcttaccgggcagcattagattcttgatttaaataattctaat 60

                                         
Query: 61 actgtcaggtaaagatgtcgtccgtgtcctt 91
          |||||||||||||||||||||||||||||||
Sbjct: 61 actgtcaggtaaagatgtcgtccgtgtcctt 91




>36763_dmo-mir-8:mirbase
          Length = 90

 Score =  155 bits (78), Expect = 6e-39
 Identities = 87/90 (96%)
 Strand = Plus / Plus

                                                                      
Query: 2  aggacatctgttcacatcttaccgggcagcattagattcttgatttaaataattctaata 61
          ||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||
Sbjct: 1  aggacatctgttcacatcttaccgggcagcattagattcctgttttaaataactctaata 60

                                        
Query: 62 ctgtcaggtaaagatgtcgtccgtgtcctt 91
          ||||||||||||||||||||||||||||||
Sbjct: 61 ctgtcaggtaaagatgtcgtccgtgtcctt 90




>36165_der-mir-8:mirbase
          Length = 87

 Score =  121 bits (61), Expect = 9e-29
 Identities = 85/91 (93%), Gaps = 4/91 (4%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaggacatctgttcacatcttaccgggcagcattagattcttgatttaaataattctaat 60
          |||||||||||||||||||||||||||||||||||||| |||  |||  |||| ||||||
Sbjct: 1  aaggacatctgttcacatcttaccgggcagcattagatcctt--ttt--ataactctaat 56

                                         
Query: 61 actgtcaggtaaagatgtcgtccgtgtcctt 91
          |||||||||||||||||||||||||||||||
Sbjct: 57 actgtcaggtaaagatgtcgtccgtgtcctt 87




>36345_dme-mir-8:mirbase
          Length = 87

 Score =  121 bits (61), Expect = 9e-29
 Identities = 85/91 (93%), Gaps = 4/91 (4%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaggacatctgttcacatcttaccgggcagcattagattcttgatttaaataattctaat 60
          |||||||||||||||||||||||||||||||||||||| |||  |||  |||| ||||||
Sbjct: 1  aaggacatctgttcacatcttaccgggcagcattagatcctt--ttt--ataactctaat 56

                                         
Query: 61 actgtcaggtaaagatgtcgtccgtgtcctt 91
          |||||||||||||||||||||||||||||||
Sbjct: 57 actgtcaggtaaagatgtcgtccgtgtcctt 87




>36346_dme-mir-8:mirbase
          Length = 87

 Score =  121 bits (61), Expect = 9e-29
 Identities = 85/91 (93%), Gaps = 4/91 (4%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaggacatctgttcacatcttaccgggcagcattagattcttgatttaaataattctaat 60
          |||||||||||||||||||||||||||||||||||||| |||  |||  |||| ||||||
Sbjct: 1  aaggacatctgttcacatcttaccgggcagcattagatcctt--ttt--ataactctaat 56

                                         
Query: 61 actgtcaggtaaagatgtcgtccgtgtcctt 91
          |||||||||||||||||||||||||||||||
Sbjct: 57 actgtcaggtaaagatgtcgtccgtgtcctt 87




>37125_dse-mir-8:mirbase
          Length = 87

 Score =  121 bits (61), Expect = 9e-29
 Identities = 85/91 (93%), Gaps = 4/91 (4%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaggacatctgttcacatcttaccgggcagcattagattcttgatttaaataattctaat 60
          |||||||||||||||||||||||||||||||||||||| |||  |||||  || ||||||
Sbjct: 1  aaggacatctgttcacatcttaccgggcagcattagatcctt--tttaa--aactctaat 56

                                         
Query: 61 actgtcaggtaaagatgtcgtccgtgtcctt 91
          |||||||||||||||||||||||||||||||
Sbjct: 57 actgtcaggtaaagatgtcgtccgtgtcctt 87




>37203_dsi-mir-8:mirbase
          Length = 87

 Score =  121 bits (61), Expect = 9e-29
 Identities = 85/91 (93%), Gaps = 4/91 (4%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaggacatctgttcacatcttaccgggcagcattagattcttgatttaaataattctaat 60
          |||||||||||||||||||||||||||||||||||||| |||  |||  |||| ||||||
Sbjct: 1  aaggacatctgttcacatcttaccgggcagcattagatcctt--ttt--ataactctaat 56

                                         
Query: 61 actgtcaggtaaagatgtcgtccgtgtcctt 91
          |||||||||||||||||||||||||||||||
Sbjct: 57 actgtcaggtaaagatgtcgtccgtgtcctt 87




>37493_dya-mir-8:mirbase
          Length = 87

 Score =  121 bits (61), Expect = 9e-29
 Identities = 85/91 (93%), Gaps = 4/91 (4%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaggacatctgttcacatcttaccgggcagcattagattcttgatttaaataattctaat 60
          |||||||||||||||||||||||||||||||||||||| |||  |||  |||| ||||||
Sbjct: 1  aaggacatctgttcacatcttaccgggcagcattagatcctt--ttt--ataactctaat 56

                                         
Query: 61 actgtcaggtaaagatgtcgtccgtgtcctt 91
          |||||||||||||||||||||||||||||||
Sbjct: 57 actgtcaggtaaagatgtcgtccgtgtcctt 87




>36836_dpe-mir-8:mirbase
          Length = 87

 Score =  115 bits (58), Expect = 6e-27
 Identities = 83/91 (91%), Gaps = 4/91 (4%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaggacatctgttcacatcttaccgggcagcattagattcttgatttaaataattctaat 60
          |||||||||||||||||||||||||||||||||||||| |    |||| |||  ||||||
Sbjct: 1  aaggacatctgttcacatcttaccgggcagcattagatcc----tttagatacctctaat 56

                                         
Query: 61 actgtcaggtaaagatgtcgtccgtgtcctt 91
          |||||||||||||||||||||||||||||||
Sbjct: 57 actgtcaggtaaagatgtcgtccgtgtcctt 87




>36912_dps-mir-8:mirbase
          Length = 87

 Score =  115 bits (58), Expect = 6e-27
 Identities = 83/91 (91%), Gaps = 4/91 (4%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaggacatctgttcacatcttaccgggcagcattagattcttgatttaaataattctaat 60
          |||||||||||||||||||||||||||||||||||||| |    |||| |||  ||||||
Sbjct: 1  aaggacatctgttcacatcttaccgggcagcattagatcc----tttagatacctctaat 56

                                         
Query: 61 actgtcaggtaaagatgtcgtccgtgtcctt 91
          |||||||||||||||||||||||||||||||
Sbjct: 57 actgtcaggtaaagatgtcgtccgtgtcctt 87




>36087_dan-mir-8:mirbase
          Length = 88

 Score =  113 bits (57), Expect = 2e-26
 Identities = 83/91 (91%), Gaps = 3/91 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaggacatctgttcacatcttaccgggcagcattagattcttgatttaaataattctaat 60
          |||||||||||||||||||||||||||||||||||||| ||   ||   |||| ||||||
Sbjct: 1  aaggacatctgttcacatcttaccgggcagcattagatcct---ttctgataactctaat 57

                                         
Query: 61 actgtcaggtaaagatgtcgtccgtgtcctt 91
          |||||||||||||||||||||||||||||||
Sbjct: 58 actgtcaggtaaagatgtcgtccgtgtcctt 88




>37414_dwi-mir-8:mirbase
          Length = 92

 Score =  111 bits (56), Expect = 9e-26
 Identities = 84/92 (91%), Gaps = 1/92 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaggacatctgttcacatcttaccgggcagcattagattct-tgatttaaataattctaa 59
          ||||||||||||||||||||||||||||||||||||||| | |  | || |||  |||||
Sbjct: 1  aaggacatctgttcacatcttaccgggcagcattagattttgtactatagatatctctaa 60

                                          
Query: 60 tactgtcaggtaaagatgtcgtccgtgtcctt 91
          ||||||||||||||||||||||||||||||||
Sbjct: 61 tactgtcaggtaaagatgtcgtccgtgtcctt 92




>36006_cqu-mir-8:mirbase
          Length = 77

 Score =  107 bits (54), Expect = 1e-24
 Identities = 72/77 (93%), Gaps = 2/77 (2%)
 Strand = Plus / Plus

                                                                      
Query: 8  tctgttcacatcttaccgggcagcattagattcttgatttaaataattctaatactgtca 67
          |||||||||||||||||||||||||||||||  ||  |||||||| ||||||||||||||
Sbjct: 2  tctgttcacatcttaccgggcagcattagatattt--tttaaatacttctaatactgtca 59

                           
Query: 68 ggtaaagatgtcgtccg 84
          |||||||||||||||||
Sbjct: 60 ggtaaagatgtcgtccg 76




>35171_aae-mir-8:mirbase
          Length = 79

 Score = 99.6 bits (50), Expect = 3e-22
 Identities = 71/77 (92%), Gaps = 2/77 (2%)
 Strand = Plus / Plus

                                                                      
Query: 8  tctgttcacatcttaccgggcagcattagattcttgatttaaataattctaatactgtca 67
          |||||||||||||||||||||||||||||||  ||  || ||||| ||||||||||||||
Sbjct: 2  tctgttcacatcttaccgggcagcattagatattt--ttgaaatacttctaatactgtca 59

                           
Query: 68 ggtaaagatgtcgtccg 84
          |||||||||||||||||
Sbjct: 60 ggtaaagatgtcgtccg 76




>35274_aga-mir-8:mirbase
          Length = 86

 Score = 73.8 bits (37), Expect = 2e-14
 Identities = 68/77 (88%), Gaps = 1/77 (1%)
 Strand = Plus / Plus

                                                                      
Query: 8  tctgttcacatcttaccgggcagcattagattcttgatttaaataattctaatactgtca 67
          |||||||||||||||||||||||||||||||   | | |   ||| ||||||||||||||
Sbjct: 6  tctgttcacatcttaccgggcagcattagatatgtta-tcggatatttctaatactgtca 64

                           
Query: 68 ggtaaagatgtcgtccg 84
          |||||||||||||||||
Sbjct: 65 ggtaaagatgtcgtccg 81




>37602_nlo-mir-8:mirbase
          Length = 86

 Score = 73.8 bits (37), Expect = 2e-14
 Identities = 68/76 (89%), Gaps = 3/76 (3%)
 Strand = Plus / Plus

                                                                      
Query: 7  atctgttcacatcttaccgggcagcattagattcttgatttaaataattctaatactgtc 66
          ||||||| ||||||||||||||||||||||||  |  |||| |||  |||||||||||||
Sbjct: 6  atctgtttacatcttaccgggcagcattagat--tacatttgaat-tttctaatactgtc 62

                          
Query: 67 aggtaaagatgtcgtc 82
          ||||||||||||||||
Sbjct: 63 aggtaaagatgtcgtc 78




>37635_nvi-mir-8:mirbase
          Length = 86

 Score = 73.8 bits (37), Expect = 2e-14
 Identities = 68/76 (89%), Gaps = 3/76 (3%)
 Strand = Plus / Plus

                                                                      
Query: 7  atctgttcacatcttaccgggcagcattagattcttgatttaaataattctaatactgtc 66
          ||||||| ||||||||||||||||||||||||  |  |||| |||  |||||||||||||
Sbjct: 6  atctgtttacatcttaccgggcagcattagat--tacatttgaat-tttctaatactgtc 62

                          
Query: 67 aggtaaagatgtcgtc 82
          ||||||||||||||||
Sbjct: 63 aggtaaagatgtcgtc 78




>35518_bmo-mir-8:mirbase
          Length = 102

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 66/74 (89%), Gaps = 2/74 (2%)
 Strand = Plus / Plus

                                                                      
Query: 11 gttcacatcttaccgggcagcattagattcttgatttaaataattctaatactgtcaggt 70
          |||| |||||||||||||||||||||| || || | || ||  |||||||||||||||||
Sbjct: 16 gttcgcatcttaccgggcagcattagagtcctg-tctatatt-ttctaatactgtcaggt 73

                        
Query: 71 aaagatgtcgtccg 84
          ||||||||||||||
Sbjct: 74 aaagatgtcgtccg 87




>35344_ame-mir-8:mirbase
          Length = 85

 Score = 65.9 bits (33), Expect = 5e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 7  atctgttcacatcttaccgggcagcattagatt 39
          |||||||||||||||||||||||||||||||||
Sbjct: 6  atctgttcacatcttaccgggcagcattagatt 38




>37695_tca-mir-8:mirbase
          Length = 73

 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 63/71 (88%), Gaps = 3/71 (4%)
 Strand = Plus / Plus

                                                                      
Query: 9  ctgttcacatcttaccgggcagcattagattcttgatttaaataattctaatactgtcag 68
          ||||| ||||||||||||||||||||||||  |  ||||  ||| |||||||||||||||
Sbjct: 2  ctgttaacatcttaccgggcagcattagat--tacattt-tatacttctaatactgtcag 58

                     
Query: 69 gtaaagatgtc 79
          |||||||||||
Sbjct: 59 gtaaagatgtc 69




>37696_tca-mir-8:mirbase
          Length = 73

 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 63/71 (88%), Gaps = 3/71 (4%)
 Strand = Plus / Plus

                                                                      
Query: 9  ctgttcacatcttaccgggcagcattagattcttgatttaaataattctaatactgtcag 68
          ||||| ||||||||||||||||||||||||  |  ||||  ||| |||||||||||||||
Sbjct: 2  ctgttaacatcttaccgggcagcattagat--tacattt-tatacttctaatactgtcag 58

                     
Query: 69 gtaaagatgtc 79
          |||||||||||
Sbjct: 59 gtaaagatgtc 69




>34999_dpu-mir-8:mirbase
          Length = 98

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 54 ttctaatactgtcaggtaaagatgtcgtccgtg 86
          |||||||||||||||||||||||||| ||||||
Sbjct: 58 ttctaatactgtcaggtaaagatgtcctccgtg 90



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 16 catcttaccgggcagcattagatt 39
          ||||||||||||||||||||||||
Sbjct: 10 catcttaccgggcagcattagatt 33




>38851_lgi-mir-8:mirbase
          Length = 98

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 54 ttctaatactgtcaggtaaagatgtc 79
          ||||||||||||||||||||||||||
Sbjct: 58 ttctaatactgtcaggtaaagatgtc 83




>38728_cte-mir-8:mirbase
          Length = 98

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 54 ttctaatactgtcaggtaaagatgtc 79
          ||||||||||||||||||||||||||
Sbjct: 57 ttctaatactgtcaggtaaagatgtc 82




>34963_isc-mir-8:mirbase
          Length = 94

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 54 ttctaatactgtcaggtaaagatgtc 79
          ||||||||||||||||||||||||||
Sbjct: 55 ttctaatactgtcaggtaaagatgtc 80




>37561_lmi-mir-8:mirbase
          Length = 61

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 16 catcttaccgggcagcattagatt 39
          ||||||||||||||||||||||||
Sbjct: 1  catcttaccgggcagcattagatt 24



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 54 ttctaatactgtcaggtaaagatgtc 79
          ||||||||||||||||||| ||||||
Sbjct: 36 ttctaatactgtcaggtaacgatgtc 61




>35047_api-mir-8:mirbase
          Length = 63

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 55 tctaatactgtcaggtaaagatgtc 79
          |||||||||||||||||| ||||||
Sbjct: 39 tctaatactgtcaggtaatgatgtc 63




>38969_sja-mir-8:mirbase
          Length = 76

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 54 ttctaatactgtcaggtaaagatg 77
          |||||||||||| |||||||||||
Sbjct: 41 ttctaatactgttaggtaaagatg 64




>38968_sja-mir-8:mirbase
          Length = 76

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 54 ttctaatactgtcaggtaaagatg 77
          |||||||||||| |||||||||||
Sbjct: 41 ttctaatactgttaggtaaagatg 64