miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36766_dmo-mir-9c:mirbase
          Length = 89

 Score =  145 bits (73), Expect = 6e-36
 Identities = 85/89 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  atttttgctgtttctttggtattctagctgtagattgtttctatatcttgtatcatctaa 60
          ||||||||||||||||||||||||||||||||||||||||  | || |||||||||||||
Sbjct: 1  atttttgctgtttctttggtattctagctgtagattgttttcacatattgtatcatctaa 60

                                       
Query: 61 agcttttataccaaagctccagcttaaat 89
          |||||||||||||||||||||||||||||
Sbjct: 61 agcttttataccaaagctccagcttaaat 89




>37342_dvi-mir-9c:mirbase
          Length = 89

 Score =  145 bits (73), Expect = 6e-36
 Identities = 85/89 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  atttttgctgtttctttggtattctagctgtagattgtttctatatcttgtatcatctaa 60
          |||||||||||||||||||||||||||||||||||||||| || |  |||||||||||||
Sbjct: 1  atttttgctgtttctttggtattctagctgtagattgtttttacagtttgtatcatctaa 60

                                       
Query: 61 agcttttataccaaagctccagcttaaat 89
          |||||||||||||||||||||||||||||
Sbjct: 61 agcttttataccaaagctccagcttaaat 89




>36090_dan-mir-9c:mirbase
          Length = 92

 Score =  115 bits (58), Expect = 5e-27
 Identities = 84/92 (91%), Gaps = 3/92 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  atttttgctgtttctttggtattctagctgtagattgtttc---tatatcttgtatcatc 57
          |||||||||||||||||||||||||||||||||||||||||    | ||  | |||||||
Sbjct: 1  atttttgctgtttctttggtattctagctgtagattgtttcacgcacattgtatatcatc 60

                                          
Query: 58 taaagcttttataccaaagctccagcttaaat 89
          ||||||||||||||||||||||||||||||||
Sbjct: 61 taaagcttttataccaaagctccagcttaaat 92




>36168_der-mir-9c:mirbase
          Length = 92

 Score =  115 bits (58), Expect = 5e-27
 Identities = 84/92 (91%), Gaps = 3/92 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  atttttgctgtttctttggtattctagctgtagattgtttc---tatatcttgtatcatc 57
          |||||||||||||||||||||||||||||||||||||||||    | ||  | |||||||
Sbjct: 1  atttttgctgtttctttggtattctagctgtagattgtttcgcgcacattgtatatcatc 60

                                          
Query: 58 taaagcttttataccaaagctccagcttaaat 89
          ||||||||||||||||||||||||||||||||
Sbjct: 61 taaagcttttataccaaagctccagcttaaat 92




>36351_dme-mir-9c:mirbase
          Length = 92

 Score =  115 bits (58), Expect = 5e-27
 Identities = 84/92 (91%), Gaps = 3/92 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  atttttgctgtttctttggtattctagctgtagattgtttc---tatatcttgtatcatc 57
          |||||||||||||||||||||||||||||||||||||||||    | ||  | |||||||
Sbjct: 1  atttttgctgtttctttggtattctagctgtagattgtttcacgcacattgtatatcatc 60

                                          
Query: 58 taaagcttttataccaaagctccagcttaaat 89
          ||||||||||||||||||||||||||||||||
Sbjct: 61 taaagcttttataccaaagctccagcttaaat 92




>36352_dme-mir-9c:mirbase
          Length = 92

 Score =  115 bits (58), Expect = 5e-27
 Identities = 84/92 (91%), Gaps = 3/92 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  atttttgctgtttctttggtattctagctgtagattgtttc---tatatcttgtatcatc 57
          |||||||||||||||||||||||||||||||||||||||||    | ||  | |||||||
Sbjct: 1  atttttgctgtttctttggtattctagctgtagattgtttcacgcacattgtatatcatc 60

                                          
Query: 58 taaagcttttataccaaagctccagcttaaat 89
          ||||||||||||||||||||||||||||||||
Sbjct: 61 taaagcttttataccaaagctccagcttaaat 92




>36839_dpe-mir-9c:mirbase
          Length = 92

 Score =  115 bits (58), Expect = 5e-27
 Identities = 84/92 (91%), Gaps = 3/92 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  atttttgctgtttctttggtattctagctgtagattgtttct---atatcttgtatcatc 57
          |||||||||||||||||||||||||||||||||||||||| |   | ||  | |||||||
Sbjct: 1  atttttgctgtttctttggtattctagctgtagattgttttttgcacattgtatatcatc 60

                                          
Query: 58 taaagcttttataccaaagctccagcttaaat 89
          ||||||||||||||||||||||||||||||||
Sbjct: 61 taaagcttttataccaaagctccagcttaaat 92




>36915_dps-mir-9c:mirbase
          Length = 92

 Score =  115 bits (58), Expect = 5e-27
 Identities = 84/92 (91%), Gaps = 3/92 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  atttttgctgtttctttggtattctagctgtagattgtttct---atatcttgtatcatc 57
          |||||||||||||||||||||||||||||||||||||||| |   | ||  | |||||||
Sbjct: 1  atttttgctgtttctttggtattctagctgtagattgttttttgcacattgtatatcatc 60

                                          
Query: 58 taaagcttttataccaaagctccagcttaaat 89
          ||||||||||||||||||||||||||||||||
Sbjct: 61 taaagcttttataccaaagctccagcttaaat 92




>37128_dse-mir-9c:mirbase
          Length = 92

 Score =  115 bits (58), Expect = 5e-27
 Identities = 84/92 (91%), Gaps = 3/92 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  atttttgctgtttctttggtattctagctgtagattgtttc---tatatcttgtatcatc 57
          |||||||||||||||||||||||||||||||||||||||||    | ||  | |||||||
Sbjct: 1  atttttgctgtttctttggtattctagctgtagattgtttcacgcacattgtatatcatc 60

                                          
Query: 58 taaagcttttataccaaagctccagcttaaat 89
          ||||||||||||||||||||||||||||||||
Sbjct: 61 taaagcttttataccaaagctccagcttaaat 92




>37497_dya-mir-9c:mirbase
          Length = 92

 Score =  115 bits (58), Expect = 5e-27
 Identities = 84/92 (91%), Gaps = 3/92 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  atttttgctgtttctttggtattctagctgtagattgtttc---tatatcttgtatcatc 57
          |||||||||||||||||||||||||||||||||||||||||    | ||  | |||||||
Sbjct: 1  atttttgctgtttctttggtattctagctgtagattgtttcgcgcacattgtatatcatc 60

                                          
Query: 58 taaagcttttataccaaagctccagcttaaat 89
          ||||||||||||||||||||||||||||||||
Sbjct: 61 taaagcttttataccaaagctccagcttaaat 92




>37418_dwi-mir-9c-1:mirbase
          Length = 91

 Score =  113 bits (57), Expect = 2e-26
 Identities = 83/91 (91%), Gaps = 3/91 (3%)
 Strand = Plus / Plus

                                                                      
Query: 2  tttttgctgtttctttggtattctagctgtagattgtttct---atatcttgtatcatct 58
          ||||||||||||||||||||||||||||||||||||||| |   | ||  | ||||||||
Sbjct: 1  tttttgctgtttctttggtattctagctgtagattgttttttgcacattgtatatcatct 60

                                         
Query: 59 aaagcttttataccaaagctccagcttaaat 89
          |||||||||||||||||||||||||||||||
Sbjct: 61 aaagcttttataccaaagctccagcttaaat 91




>37419_dwi-mir-9c-2:mirbase
          Length = 91

 Score =  113 bits (57), Expect = 2e-26
 Identities = 83/91 (91%), Gaps = 3/91 (3%)
 Strand = Plus / Plus

                                                                      
Query: 2  tttttgctgtttctttggtattctagctgtagattgtttct---atatcttgtatcatct 58
          ||||||||||||||||||||||||||||||||||||||| |   | ||  | ||||||||
Sbjct: 1  tttttgctgtttctttggtattctagctgtagattgttttttgcacattgtatatcatct 60

                                         
Query: 59 aaagcttttataccaaagctccagcttaaat 89
          |||||||||||||||||||||||||||||||
Sbjct: 61 aaagcttttataccaaagctccagcttaaat 91




>35277_aga-mir-9c:mirbase
          Length = 90

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 7  gctgtttctttggtattctagctgtagattgtt 39
          ||||| |||||||||||||||||||||| ||||
Sbjct: 7  gctgtatctttggtattctagctgtagaatgtt 39




>35175_aae-mir-9c:mirbase
          Length = 83

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 13 tctttggtattctagctgtagattgtt 39
          |||||||||||||||||||||| ||||
Sbjct: 6  tctttggtattctagctgtagaatgtt 32




>35176_aae-mir-9c:mirbase
          Length = 83

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 13 tctttggtattctagctgtagattgtt 39
          |||||||||||||||||||||| ||||
Sbjct: 6  tctttggtattctagctgtagaatgtt 32




>36007_cqu-mir-9:mirbase
          Length = 111

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 13 tctttggtattctagctgtagattgtt 39
          |||||||||||||||||||||| ||||
Sbjct: 23 tctttggtattctagctgtagaatgtt 49