miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36770_dmo-mir-13a:mirbase
Length = 74
Score = 123 bits (62), Expect = 2e-29
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 1 tgcgtaactcttcaaggggttgtgaaatgtgggtattatcaagtcatatcacagccattt 60
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 1 tgcgtaactcttcaaggggttgtgaaatgtagccattatcaagtcatatcacagccattt 60
Query: 61 tgatgagtttcgtg 74
||||||||||||||
Sbjct: 61 tgatgagtttcgtg 74
>37346_dvi-mir-13a:mirbase
Length = 74
Score = 115 bits (58), Expect = 4e-27
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 1 tgcgtaactcttcaaggggttgtgaaatgtgggtattatcaagtcatatcacagccattt 60
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 1 tgcgtaactcttcaaggggttgtgaaatgttgccgttatcaagtcatatcacagccattt 60
Query: 61 tgatgagtttcgtg 74
||||||||||||||
Sbjct: 61 tgatgagtttcgtg 74
>36172_der-mir-13a:mirbase
Length = 75
Score = 81.8 bits (41), Expect = 6e-17
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 3 cgtaactcttcaaggggttgtgaaatgtggg-tattatcaagtcatatcacagccatttt 61
|||||||| |||| |||||||||||||| | ||||||| | ||||||||||||||||||
Sbjct: 3 cgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatttt 62
Query: 62 gatgagtttcgtg 74
|||||||||||||
Sbjct: 63 gatgagtttcgtg 75
>36359_dme-mir-13a:mirbase
Length = 75
Score = 81.8 bits (41), Expect = 6e-17
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 3 cgtaactcttcaaggggttgtgaaatgtggg-tattatcaagtcatatcacagccatttt 61
|||||||| |||| |||||||||||||| | ||||||| | ||||||||||||||||||
Sbjct: 3 cgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatttt 62
Query: 62 gatgagtttcgtg 74
|||||||||||||
Sbjct: 63 gatgagtttcgtg 75
>36360_dme-mir-13a:mirbase
Length = 75
Score = 81.8 bits (41), Expect = 6e-17
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 3 cgtaactcttcaaggggttgtgaaatgtggg-tattatcaagtcatatcacagccatttt 61
|||||||| |||| |||||||||||||| | ||||||| | ||||||||||||||||||
Sbjct: 3 cgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatttt 62
Query: 62 gatgagtttcgtg 74
|||||||||||||
Sbjct: 63 gatgagtttcgtg 75
>37132_dse-mir-13a:mirbase
Length = 75
Score = 81.8 bits (41), Expect = 6e-17
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 3 cgtaactcttcaaggggttgtgaaatgtggg-tattatcaagtcatatcacagccatttt 61
|||||||| |||| |||||||||||||| | ||||||| | ||||||||||||||||||
Sbjct: 3 cgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatttt 62
Query: 62 gatgagtttcgtg 74
|||||||||||||
Sbjct: 63 gatgagtttcgtg 75
>37208_dsi-mir-13a:mirbase
Length = 75
Score = 81.8 bits (41), Expect = 6e-17
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 3 cgtaactcttcaaggggttgtgaaatgtggg-tattatcaagtcatatcacagccatttt 61
|||||||| |||| |||||||||||||| | ||||||| | ||||||||||||||||||
Sbjct: 3 cgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatttt 62
Query: 62 gatgagtttcgtg 74
|||||||||||||
Sbjct: 63 gatgagtttcgtg 75
>37500_dya-mir-13a:mirbase
Length = 75
Score = 81.8 bits (41), Expect = 6e-17
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 3 cgtaactcttcaaggggttgtgaaatgtggg-tattatcaagtcatatcacagccatttt 61
|||||||| |||| |||||||||||||| | ||||||| | ||||||||||||||||||
Sbjct: 3 cgtaactcctcaaagggttgtgaaatgtcgcctattatctactcatatcacagccatttt 62
Query: 62 gatgagtttcgtg 74
|||||||||||||
Sbjct: 63 gatgagtttcgtg 75
>36094_dan-mir-13a:mirbase
Length = 74
Score = 79.8 bits (40), Expect = 2e-16
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 3 cgtaactcttcaaggggttgtgaaatgtgggtattatcaagtcatatcacagccattttg 62
|||||||| |||| ||| |||||||||| | |||||| | |||||||||||||||||||
Sbjct: 3 cgtaactcctcaaagggctgtgaaatgttgccattatctactcatatcacagccattttg 62
Query: 63 atgagtttcgtg 74
||||||||||||
Sbjct: 63 atgagtttcgtg 74
>36843_dpe-mir-13a:mirbase
Length = 74
Score = 73.8 bits (37), Expect = 1e-14
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 18 ggttgtgaaatgtgggtattatcaagtcatatcacagccattttgatgagtttcgtg 74
||||||||||||| | ||||||| |||||||||||||||||||||||||||||||
Sbjct: 18 ggttgtgaaatgttgcatttatcaaatcatatcacagccattttgatgagtttcgtg 74
>36919_dps-mir-13a:mirbase
Length = 74
Score = 73.8 bits (37), Expect = 1e-14
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 18 ggttgtgaaatgtgggtattatcaagtcatatcacagccattttgatgagtttcgtg 74
||||||||||||| | ||||||| |||||||||||||||||||||||||||||||
Sbjct: 18 ggttgtgaaatgttgcatttatcaaatcatatcacagccattttgatgagtttcgtg 74
>37423_dwi-mir-13a:mirbase
Length = 78
Score = 67.9 bits (34), Expect = 9e-13
Identities = 67/76 (88%), Gaps = 4/76 (5%)
Strand = Plus / Plus
Query: 3 cgtaactcttcaagggg-ttgtgaaatgtgggtattat---caagtcatatcacagccat 58
||||||||||||||||| ||||||||||| | ||| | ||| |||||||||||||||
Sbjct: 3 cgtaactcttcaagggggttgtgaaatgttgccattttattcaactcatatcacagccat 62
Query: 59 tttgatgagtttcgtg 74
||||||||||||||||
Sbjct: 63 tttgatgagtttcgtg 78
>35352_ame-mir-13a:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 agtcatatcacagccattttgatgag 67
||||||||||||||||||||||||||
Sbjct: 59 agtcatatcacagccattttgatgag 84
>36096_dan-mir-13b-2:mirbase
Length = 66
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 43 gtcatatcacagccattttgatgagttt 70
||||||||||||||||||||| ||||||
Sbjct: 38 gtcatatcacagccattttgacgagttt 65
>35281_aga-mir-13b:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 53 tcatatcacagccattttgacgagttt 79
>36011_cqu-mir-13:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 52 tcatatcacagccattttgacgagttt 78
>36095_dan-mir-13b-1:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>36173_der-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>36174_der-mir-13b-2:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>36261_dgr-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>36262_dgr-mir-13b-2:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 46 tcatatcacagccattttgacgagttt 72
>36361_dme-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>36362_dme-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>36363_dme-mir-13b-2:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 43 tcatatcacagccattttgacgagttt 69
>36364_dme-mir-13b-2:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 43 tcatatcacagccattttgacgagttt 69
>36771_dmo-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>36772_dmo-mir-13b-2:mirbase
Length = 67
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>36844_dpe-mir-13b-1:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>36845_dpe-mir-13b-2:mirbase
Length = 66
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>36920_dps-mir-13b-1:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>36921_dps-mir-13b-2:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 42 tcatatcacagccattttgacgagttt 68
>37133_dse-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>37134_dse-mir-13b-2:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>37209_dsi-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>37210_dsi-mir-13b-2:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>37347_dvi-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>37348_dvi-mir-13b-2:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 46 tcatatcacagccattttgacgagttt 72
>37424_dwi-mir-13b-1:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 43 tcatatcacagccattttgacgagttt 69
>37501_dya-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>37502_dya-mir-13b-2:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>37572_ngi-mir-13a:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 catatcacagccattttgatgag 67
|||||||||||||||||||||||
Sbjct: 49 catatcacagccattttgatgag 71
>37606_nlo-mir-13a:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 catatcacagccattttgatgag 67
|||||||||||||||||||||||
Sbjct: 49 catatcacagccattttgatgag 71
>37639_nvi-mir-13a:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 catatcacagccattttgatgag 67
|||||||||||||||||||||||
Sbjct: 65 catatcacagccattttgatgag 87
>35180_aae-mir-13:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagtt 69
|||||||||||||||||||| |||||
Sbjct: 51 tcatatcacagccattttgacgagtt 76
>37425_dwi-mir-13b-2:mirbase
Length = 67
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagtt 69
|||||||||||||||||||| |||||
Sbjct: 41 tcatatcacagccattttgacgagtt 66
>35051_api-mir-13a:mirbase
Length = 61
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgag 67
|||||||||||||| |||||||||
Sbjct: 37 tcatatcacagccactttgatgag 60
>37713_tca-mir-13b:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 tatcacagccattttgatgagttt 70
||||||||||||||||| ||||||
Sbjct: 46 tatcacagccattttgacgagttt 69
>37714_tca-mir-13b:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 tatcacagccattttgatgagttt 70
||||||||||||||||| ||||||
Sbjct: 46 tatcacagccattttgacgagttt 69
