miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36770_dmo-mir-13a:mirbase
          Length = 74

 Score =  123 bits (62), Expect = 2e-29
 Identities = 71/74 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcgtaactcttcaaggggttgtgaaatgtgggtattatcaagtcatatcacagccattt 60
          |||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||
Sbjct: 1  tgcgtaactcttcaaggggttgtgaaatgtagccattatcaagtcatatcacagccattt 60

                        
Query: 61 tgatgagtttcgtg 74
          ||||||||||||||
Sbjct: 61 tgatgagtttcgtg 74




>37346_dvi-mir-13a:mirbase
          Length = 74

 Score =  115 bits (58), Expect = 4e-27
 Identities = 70/74 (94%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcgtaactcttcaaggggttgtgaaatgtgggtattatcaagtcatatcacagccattt 60
          |||||||||||||||||||||||||||||| |   |||||||||||||||||||||||||
Sbjct: 1  tgcgtaactcttcaaggggttgtgaaatgttgccgttatcaagtcatatcacagccattt 60

                        
Query: 61 tgatgagtttcgtg 74
          ||||||||||||||
Sbjct: 61 tgatgagtttcgtg 74




>36172_der-mir-13a:mirbase
          Length = 75

 Score = 81.8 bits (41), Expect = 6e-17
 Identities = 66/73 (90%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                      
Query: 3  cgtaactcttcaaggggttgtgaaatgtggg-tattatcaagtcatatcacagccatttt 61
          |||||||| |||| |||||||||||||| |  ||||||| | ||||||||||||||||||
Sbjct: 3  cgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatttt 62

                       
Query: 62 gatgagtttcgtg 74
          |||||||||||||
Sbjct: 63 gatgagtttcgtg 75




>36359_dme-mir-13a:mirbase
          Length = 75

 Score = 81.8 bits (41), Expect = 6e-17
 Identities = 66/73 (90%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                      
Query: 3  cgtaactcttcaaggggttgtgaaatgtggg-tattatcaagtcatatcacagccatttt 61
          |||||||| |||| |||||||||||||| |  ||||||| | ||||||||||||||||||
Sbjct: 3  cgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatttt 62

                       
Query: 62 gatgagtttcgtg 74
          |||||||||||||
Sbjct: 63 gatgagtttcgtg 75




>36360_dme-mir-13a:mirbase
          Length = 75

 Score = 81.8 bits (41), Expect = 6e-17
 Identities = 66/73 (90%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                      
Query: 3  cgtaactcttcaaggggttgtgaaatgtggg-tattatcaagtcatatcacagccatttt 61
          |||||||| |||| |||||||||||||| |  ||||||| | ||||||||||||||||||
Sbjct: 3  cgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatttt 62

                       
Query: 62 gatgagtttcgtg 74
          |||||||||||||
Sbjct: 63 gatgagtttcgtg 75




>37132_dse-mir-13a:mirbase
          Length = 75

 Score = 81.8 bits (41), Expect = 6e-17
 Identities = 66/73 (90%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                      
Query: 3  cgtaactcttcaaggggttgtgaaatgtggg-tattatcaagtcatatcacagccatttt 61
          |||||||| |||| |||||||||||||| |  ||||||| | ||||||||||||||||||
Sbjct: 3  cgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatttt 62

                       
Query: 62 gatgagtttcgtg 74
          |||||||||||||
Sbjct: 63 gatgagtttcgtg 75




>37208_dsi-mir-13a:mirbase
          Length = 75

 Score = 81.8 bits (41), Expect = 6e-17
 Identities = 66/73 (90%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                      
Query: 3  cgtaactcttcaaggggttgtgaaatgtggg-tattatcaagtcatatcacagccatttt 61
          |||||||| |||| |||||||||||||| |  ||||||| | ||||||||||||||||||
Sbjct: 3  cgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatttt 62

                       
Query: 62 gatgagtttcgtg 74
          |||||||||||||
Sbjct: 63 gatgagtttcgtg 75




>37500_dya-mir-13a:mirbase
          Length = 75

 Score = 81.8 bits (41), Expect = 6e-17
 Identities = 66/73 (90%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                      
Query: 3  cgtaactcttcaaggggttgtgaaatgtggg-tattatcaagtcatatcacagccatttt 61
          |||||||| |||| |||||||||||||| |  ||||||| | ||||||||||||||||||
Sbjct: 3  cgtaactcctcaaagggttgtgaaatgtcgcctattatctactcatatcacagccatttt 62

                       
Query: 62 gatgagtttcgtg 74
          |||||||||||||
Sbjct: 63 gatgagtttcgtg 75




>36094_dan-mir-13a:mirbase
          Length = 74

 Score = 79.8 bits (40), Expect = 2e-16
 Identities = 64/72 (88%)
 Strand = Plus / Plus

                                                                      
Query: 3  cgtaactcttcaaggggttgtgaaatgtgggtattatcaagtcatatcacagccattttg 62
          |||||||| |||| ||| |||||||||| |  |||||| | |||||||||||||||||||
Sbjct: 3  cgtaactcctcaaagggctgtgaaatgttgccattatctactcatatcacagccattttg 62

                      
Query: 63 atgagtttcgtg 74
          ||||||||||||
Sbjct: 63 atgagtttcgtg 74




>36843_dpe-mir-13a:mirbase
          Length = 74

 Score = 73.8 bits (37), Expect = 1e-14
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                   
Query: 18 ggttgtgaaatgtgggtattatcaagtcatatcacagccattttgatgagtttcgtg 74
          ||||||||||||| |   ||||||| |||||||||||||||||||||||||||||||
Sbjct: 18 ggttgtgaaatgttgcatttatcaaatcatatcacagccattttgatgagtttcgtg 74




>36919_dps-mir-13a:mirbase
          Length = 74

 Score = 73.8 bits (37), Expect = 1e-14
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                   
Query: 18 ggttgtgaaatgtgggtattatcaagtcatatcacagccattttgatgagtttcgtg 74
          ||||||||||||| |   ||||||| |||||||||||||||||||||||||||||||
Sbjct: 18 ggttgtgaaatgttgcatttatcaaatcatatcacagccattttgatgagtttcgtg 74




>37423_dwi-mir-13a:mirbase
          Length = 78

 Score = 67.9 bits (34), Expect = 9e-13
 Identities = 67/76 (88%), Gaps = 4/76 (5%)
 Strand = Plus / Plus

                                                                      
Query: 3  cgtaactcttcaagggg-ttgtgaaatgtgggtattat---caagtcatatcacagccat 58
          ||||||||||||||||| ||||||||||| |  ||| |   ||| |||||||||||||||
Sbjct: 3  cgtaactcttcaagggggttgtgaaatgttgccattttattcaactcatatcacagccat 62

                          
Query: 59 tttgatgagtttcgtg 74
          ||||||||||||||||
Sbjct: 63 tttgatgagtttcgtg 78




>35352_ame-mir-13a:mirbase
          Length = 100

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 42 agtcatatcacagccattttgatgag 67
          ||||||||||||||||||||||||||
Sbjct: 59 agtcatatcacagccattttgatgag 84




>36096_dan-mir-13b-2:mirbase
          Length = 66

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 43 gtcatatcacagccattttgatgagttt 70
          ||||||||||||||||||||| ||||||
Sbjct: 38 gtcatatcacagccattttgacgagttt 65




>35281_aga-mir-13b:mirbase
          Length = 94

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 53 tcatatcacagccattttgacgagttt 79




>36011_cqu-mir-13:mirbase
          Length = 82

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 52 tcatatcacagccattttgacgagttt 78




>36095_dan-mir-13b-1:mirbase
          Length = 69

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67




>36173_der-mir-13b-1:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>36174_der-mir-13b-2:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67




>36261_dgr-mir-13b-1:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>36262_dgr-mir-13b-2:mirbase
          Length = 73

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 46 tcatatcacagccattttgacgagttt 72




>36361_dme-mir-13b-1:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>36362_dme-mir-13b-1:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>36363_dme-mir-13b-2:mirbase
          Length = 70

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 43 tcatatcacagccattttgacgagttt 69




>36364_dme-mir-13b-2:mirbase
          Length = 70

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 43 tcatatcacagccattttgacgagttt 69




>36771_dmo-mir-13b-1:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>36772_dmo-mir-13b-2:mirbase
          Length = 67

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67




>36844_dpe-mir-13b-1:mirbase
          Length = 69

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67




>36845_dpe-mir-13b-2:mirbase
          Length = 66

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>36920_dps-mir-13b-1:mirbase
          Length = 69

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67




>36921_dps-mir-13b-2:mirbase
          Length = 69

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 42 tcatatcacagccattttgacgagttt 68




>37133_dse-mir-13b-1:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>37134_dse-mir-13b-2:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67




>37209_dsi-mir-13b-1:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>37210_dsi-mir-13b-2:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67




>37347_dvi-mir-13b-1:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>37348_dvi-mir-13b-2:mirbase
          Length = 73

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 46 tcatatcacagccattttgacgagttt 72




>37424_dwi-mir-13b-1:mirbase
          Length = 71

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 43 tcatatcacagccattttgacgagttt 69




>37501_dya-mir-13b-1:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>37502_dya-mir-13b-2:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tcatatcacagccattttgatgagttt 70
          |||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67




>37572_ngi-mir-13a:mirbase
          Length = 85

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 45 catatcacagccattttgatgag 67
          |||||||||||||||||||||||
Sbjct: 49 catatcacagccattttgatgag 71




>37606_nlo-mir-13a:mirbase
          Length = 85

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 45 catatcacagccattttgatgag 67
          |||||||||||||||||||||||
Sbjct: 49 catatcacagccattttgatgag 71




>37639_nvi-mir-13a:mirbase
          Length = 103

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 45 catatcacagccattttgatgag 67
          |||||||||||||||||||||||
Sbjct: 65 catatcacagccattttgatgag 87




>35180_aae-mir-13:mirbase
          Length = 84

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 44 tcatatcacagccattttgatgagtt 69
          |||||||||||||||||||| |||||
Sbjct: 51 tcatatcacagccattttgacgagtt 76




>37425_dwi-mir-13b-2:mirbase
          Length = 67

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 44 tcatatcacagccattttgatgagtt 69
          |||||||||||||||||||| |||||
Sbjct: 41 tcatatcacagccattttgacgagtt 66




>35051_api-mir-13a:mirbase
          Length = 61

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 44 tcatatcacagccattttgatgag 67
          |||||||||||||| |||||||||
Sbjct: 37 tcatatcacagccactttgatgag 60




>37713_tca-mir-13b:mirbase
          Length = 74

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 47 tatcacagccattttgatgagttt 70
          ||||||||||||||||| ||||||
Sbjct: 46 tatcacagccattttgacgagttt 69




>37714_tca-mir-13b:mirbase
          Length = 74

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 47 tatcacagccattttgatgagttt 70
          ||||||||||||||||| ||||||
Sbjct: 46 tatcacagccattttgacgagttt 69