miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>37353_dvi-mir-34:mirbase
          Length = 87

 Score =  165 bits (83), Expect = 6e-42
 Identities = 86/87 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggctatgcgctttggcagtgtggttagctggttgtgtggccaactgacaaatcacagcc 60
          |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1  tggctatgcgctttggcagtgtggttagctggttgtgtggccaattgacaaatcacagcc 60

                                     
Query: 61 actatcttcactgccgccgcgacaagc 87
          |||||||||||||||||||||||||||
Sbjct: 61 actatcttcactgccgccgcgacaagc 87




>36777_dmo-mir-34:mirbase
          Length = 87

 Score =  149 bits (75), Expect = 4e-37
 Identities = 84/87 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggctatgcgctttggcagtgtggttagctggttgtgtggccaactgacaaatcacagcc 60
          |||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||
Sbjct: 1  tggctatgcgctttggcagtgtggttagctggttgtgtggccacttgaaaaatcacagcc 60

                                     
Query: 61 actatcttcactgccgccgcgacaagc 87
          |||||||||||||||||||||||||||
Sbjct: 61 actatcttcactgccgccgcgacaagc 87




>36179_der-mir-34:mirbase
          Length = 96

 Score =  103 bits (52), Expect = 2e-23
 Identities = 84/96 (87%), Gaps = 9/96 (9%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggctatgcgctttggcagtgtggttagctggttgtgtggccaa---------ctgacaa 51
          |||||||||||||||||||||||||||||||||||||| |||||          ||||||
Sbjct: 1  tggctatgcgctttggcagtgtggttagctggttgtgtagccaatcattgcttgtgacaa 60

                                              
Query: 52 atcacagccactatcttcactgccgccgcgacaagc 87
           |||||||||||||||||||||||||||||||||||
Sbjct: 61 ctcacagccactatcttcactgccgccgcgacaagc 96




>36373_dme-mir-34:mirbase
          Length = 99

 Score =  103 bits (52), Expect = 2e-23
 Identities = 84/96 (87%), Gaps = 9/96 (9%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggctatgcgctttggcagtgtggttagctggttgtgtggccaa---------ctgacaa 51
          |||||||||||||||||||||||||||||||||||||| |||||          ||||||
Sbjct: 4  tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgccgttgacaa 63

                                              
Query: 52 atcacagccactatcttcactgccgccgcgacaagc 87
           |||||||||||||||||||||||||||||||||||
Sbjct: 64 ttcacagccactatcttcactgccgccgcgacaagc 99




>36374_dme-mir-34:mirbase
          Length = 99

 Score =  103 bits (52), Expect = 2e-23
 Identities = 84/96 (87%), Gaps = 9/96 (9%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggctatgcgctttggcagtgtggttagctggttgtgtggccaa---------ctgacaa 51
          |||||||||||||||||||||||||||||||||||||| |||||          ||||||
Sbjct: 4  tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgccgttgacaa 63

                                              
Query: 52 atcacagccactatcttcactgccgccgcgacaagc 87
           |||||||||||||||||||||||||||||||||||
Sbjct: 64 ttcacagccactatcttcactgccgccgcgacaagc 99




>37139_dse-mir-34:mirbase
          Length = 96

 Score =  103 bits (52), Expect = 2e-23
 Identities = 84/96 (87%), Gaps = 9/96 (9%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggctatgcgctttggcagtgtggttagctggttgtgtggccaa---------ctgacaa 51
          |||||||||||||||||||||||||||||||||||||| |||||          ||||||
Sbjct: 1  tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgccgttgacaa 60

                                              
Query: 52 atcacagccactatcttcactgccgccgcgacaagc 87
           |||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcacagccactatcttcactgccgccgcgacaagc 96




>37215_dsi-mir-34:mirbase
          Length = 96

 Score =  103 bits (52), Expect = 2e-23
 Identities = 84/96 (87%), Gaps = 9/96 (9%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggctatgcgctttggcagtgtggttagctggttgtgtggccaa---------ctgacaa 51
          |||||||||||||||||||||||||||||||||||||| |||||          ||||||
Sbjct: 1  tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgccgttgacaa 60

                                              
Query: 52 atcacagccactatcttcactgccgccgcgacaagc 87
           |||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcacagccactatcttcactgccgccgcgacaagc 96




>37507_dya-mir-34:mirbase
          Length = 96

 Score =  103 bits (52), Expect = 2e-23
 Identities = 84/96 (87%), Gaps = 9/96 (9%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggctatgcgctttggcagtgtggttagctggttgtgtggccaa---------ctgacaa 51
          |||||||||||||||||||||||||||||||||||||| |||||          ||||||
Sbjct: 1  tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgccgttgacaa 60

                                              
Query: 52 atcacagccactatcttcactgccgccgcgacaagc 87
           |||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcacagccactatcttcactgccgccgcgacaagc 96




>36850_dpe-mir-34:mirbase
          Length = 97

 Score = 91.7 bits (46), Expect = 8e-20
 Identities = 83/97 (85%), Gaps = 10/97 (10%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggctatgcgctttggcagtgtggttagctggttgtgtggccaa----------ctgaca 50
          |||||||||||||||||||||||||||||||||||||| |||||           |||| 
Sbjct: 1  tggctatgcgctttggcagtgtggttagctggttgtgtagccaaaatattgcctttgacc 60

                                               
Query: 51 aatcacagccactatcttcactgccgccgcgacaagc 87
          | |||||||||||||||||||||||||||||||||||
Sbjct: 61 attcacagccactatcttcactgccgccgcgacaagc 97




>36926_dps-mir-34:mirbase
          Length = 100

 Score = 91.7 bits (46), Expect = 8e-20
 Identities = 83/97 (85%), Gaps = 10/97 (10%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggctatgcgctttggcagtgtggttagctggttgtgtggccaa----------ctgaca 50
           |||||||||||||||||||||||||||||||||||||| |||||           |||| 
Sbjct: 4   tggctatgcgctttggcagtgtggttagctggttgtgtagccaaaatattgcctttgacc 63

                                                
Query: 51  aatcacagccactatcttcactgccgccgcgacaagc 87
           | |||||||||||||||||||||||||||||||||||
Sbjct: 64  attcacagccactatcttcactgccgccgcgacaagc 100




>37430_dwi-mir-34:mirbase
          Length = 100

 Score = 79.8 bits (40), Expect = 3e-16
 Identities = 43/44 (97%)
 Strand = Plus / Plus

                                                      
Query: 1  tggctatgcgctttggcagtgtggttagctggttgtgtggccaa 44
          |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1  tggctatgcgctttggcagtgtggttagctggttgtgtagccaa 44




>36101_dan-mir-34:mirbase
          Length = 97

 Score = 75.8 bits (38), Expect = 5e-15
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                
Query: 1  tggctatgcgctttggcagtgtggttagctggttgtgt 38
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tggctatgcgctttggcagtgtggttagctggttgtgt 38



 Score = 69.9 bits (35), Expect = 3e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 53 tcacagccactatcttcactgccgccgcgacaagc 87
          |||||||||||||||||||||||||||||||||||
Sbjct: 63 tcacagccactatcttcactgccgccgcgacaagc 97




>35283_aga-mir-34:mirbase
          Length = 90

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 9  cgctttggcagtgtggttagctggttgtgtgg 40
          |||| |||||||||||||||||||||||||||
Sbjct: 12 cgctctggcagtgtggttagctggttgtgtgg 43




>35184_aae-mir-34:mirbase
          Length = 129

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 9  cgctttggcagtgtggttagctggttgtgt 38
          |||| |||||||||||||||||||||||||
Sbjct: 11 cgctatggcagtgtggttagctggttgtgt 40




>35531_bmo-mir-34:mirbase
          Length = 98

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 13 ttggcagtgtggttagctggttgtgt 38
          ||||||||||||||||||||||||||
Sbjct: 20 ttggcagtgtggttagctggttgtgt 45




>37576_ngi-mir-34:mirbase
          Length = 80

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 13 ttggcagtgtggttagctggttgtgt 38
          ||||||||||||||||||||||||||
Sbjct: 7  ttggcagtgtggttagctggttgtgt 32




>37608_nlo-mir-34:mirbase
          Length = 80

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 13 ttggcagtgtggttagctggttgtgt 38
          ||||||||||||||||||||||||||
Sbjct: 7  ttggcagtgtggttagctggttgtgt 32




>37645_nvi-mir-34:mirbase
          Length = 99

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 13 ttggcagtgtggttagctggttgtgt 38
          ||||||||||||||||||||||||||
Sbjct: 20 ttggcagtgtggttagctggttgtgt 45




>35005_dpu-mir-34:mirbase
          Length = 101

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 13 ttggcagtgtggttagctggttgtg 37
          |||||||||||||||||||||||||
Sbjct: 21 ttggcagtgtggttagctggttgtg 45




>35358_ame-mir-34:mirbase
          Length = 100

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 13 ttggcagtgtggttagctggttgtgtggc 41
          |||||||||| ||||||||||||||||||
Sbjct: 20 ttggcagtgttgttagctggttgtgtggc 48




>37723_tca-mir-34:mirbase
          Length = 79

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 14 tggcagtgtggttagctggttgtgt 38
          |||||||||||||||||||||||||
Sbjct: 11 tggcagtgtggttagctggttgtgt 35




>37724_tca-mir-34:mirbase
          Length = 79

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 14 tggcagtgtggttagctggttgtgt 38
          |||||||||||||||||||||||||
Sbjct: 11 tggcagtgtggttagctggttgtgt 35




>38739_cte-mir-34:mirbase
          Length = 101

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 14 tggcagtgtggttagctggttgtg 37
          ||||||||||||||||||||||||
Sbjct: 22 tggcagtgtggttagctggttgtg 45




>34870_sko-mir-34:mirbase
          Length = 101

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 14 tggcagtgtggttagctggttgt 36
          |||||||||||||||||||||||
Sbjct: 22 tggcagtgtggttagctggttgt 44




>38100_bma-mir-34:mirbase
          Length = 111

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 14 tggcagtgtggttagctggttgt 36
          |||||||||||||||||||||||
Sbjct: 23 tggcagtgtggttagctggttgt 45




>38488_crm-mir-34:mirbase
          Length = 88

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 15 ggcagtgtggttagctggttg 35
          |||||||||||||||||||||
Sbjct: 16 ggcagtgtggttagctggttg 36




>35054_api-mir-34:mirbase
          Length = 68

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 14 tggcagtgtggttagctggttgtgt 38
          |||||||||| ||||||||||||||
Sbjct: 1  tggcagtgtgattagctggttgtgt 25




>38127_cbr-mir-34:mirbase
          Length = 93

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 15 ggcagtgtggttagctggttg 35
          |||||||||||||||||||||
Sbjct: 19 ggcagtgtggttagctggttg 39




>38268_cel-mir-34:mirbase
          Length = 97

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 15 ggcagtgtggttagctggttg 35
          |||||||||||||||||||||
Sbjct: 17 ggcagtgtggttagctggttg 37




>38858_lgi-mir-34:mirbase
          Length = 101

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 14 tggcagtgtggttagctggt 33
          ||||||||||||||||||||
Sbjct: 22 tggcagtgtggttagctggt 41