miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36779_dmo-mir-87:mirbase
Length = 92
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 5 tttcattcgcgcctgtatcttgctgaaccgttaccattgtgacatccaaatccggttgag 64
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 5 tttcattcgcgcctgtatcttgctgaaccgttacaattgtcacatccaaatccggttgag 64
Query: 65 caaaatttcaggtgtgtgagaaatttgt 92
||||||||||||||||||||||||||||
Sbjct: 65 caaaatttcaggtgtgtgagaaatttgt 92
>37355_dvi-mir-87:mirbase
Length = 92
Score = 159 bits (80), Expect = 4e-40
Identities = 89/92 (96%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccattgtgacatccaaatccggt 60
|||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttacaattgagacatctaaatccggt 60
Query: 61 tgagcaaaatttcaggtgtgtgagaaatttgt 92
||||||||||||||||||||||||||||||||
Sbjct: 61 tgagcaaaatttcaggtgtgtgagaaatttgt 92
>37434_dwi-mir-87-2:mirbase
Length = 93
Score = 129 bits (65), Expect = 4e-31
Identities = 87/93 (93%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttacc-attgtgacatccaaatccgg 59
||||||||||||||||||||||||||||||||||||||| ||||||| | || |||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcttcatttccgg 60
Query: 60 ttgagcaaaatttcaggtgtgtgagaaatttgt 92
|||||||||||||||||||||||||||||||||
Sbjct: 61 ttgagcaaaatttcaggtgtgtgagaaatttgt 93
>37433_dwi-mir-87-1:mirbase
Length = 93
Score = 123 bits (62), Expect = 2e-29
Identities = 89/94 (94%), Gaps = 3/94 (3%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttacca-ttgtga-catccaaatccg 58
|||||||||||||||||||||||||||||||||||||||| |||||| |||| | ||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcatc-atttccg 59
Query: 59 gttgagcaaaatttcaggtgtgtgagaaatttgt 92
||||||||||||||||||||||||||||||||||
Sbjct: 60 gttgagcaaaatttcaggtgtgtgagaaatttgt 93
>36103_dan-mir-87:mirbase
Length = 92
Score = 119 bits (60), Expect = 4e-28
Identities = 85/92 (92%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccattgtgacatccaaatccggt 60
||||||||||||||||||||||||||||||||||||||| | || || | ||||||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccgatatggca-cagaatccggt 59
Query: 61 tgagcaaaatttcaggtgtgtgagaaatttgt 92
||||||||||||||||||||||||||||||||
Sbjct: 60 tgagcaaaatttcaggtgtgtgagaaatttgt 91
>36181_der-mir-87:mirbase
Length = 92
Score = 119 bits (60), Expect = 4e-28
Identities = 85/92 (92%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccattgtgacatccaaatccggt 60
|||||||||||||||||||||||||||||||||||| ||||| || | | | | ||||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttgccattatggcctacga-tccggt 59
Query: 61 tgagcaaaatttcaggtgtgtgagaaatttgt 92
||||||||||||||||||||||||||||||||
Sbjct: 60 tgagcaaaatttcaggtgtgtgagaaatttgt 91
>37509_dya-mir-87:mirbase
Length = 92
Score = 111 bits (56), Expect = 9e-26
Identities = 84/92 (91%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccattgtgacatccaaatccggt 60
|||||||||||||||||||||||||||||||||||||| ||| || | | | ||||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttacaattatggtcttcga-tccggt 59
Query: 61 tgagcaaaatttcaggtgtgtgagaaatttgt 92
||||||||||||||||||||||||||||||||
Sbjct: 60 tgagcaaaatttcaggtgtgtgagaaatttgt 91
>36377_dme-mir-87:mirbase
Length = 99
Score = 91.7 bits (46), Expect = 8e-20
Identities = 78/87 (89%), Gaps = 5/87 (5%)
Strand = Plus / Plus
Query: 4 atttcattcgcgcctgtatcttgctgaaccgttaccattgtgacatccaa--atccggtt 61
||||||||||||||||||||||||||||||| | ||||| || | ||| ||||||||
Sbjct: 6 atttcattcgcgcctgtatcttgctgaaccgctgccattatggc---caacgatccggtt 62
Query: 62 gagcaaaatttcaggtgtgtgagaaat 88
|||||||||||||||||||||||||||
Sbjct: 63 gagcaaaatttcaggtgtgtgagaaat 89
>36378_dme-mir-87:mirbase
Length = 99
Score = 91.7 bits (46), Expect = 8e-20
Identities = 78/87 (89%), Gaps = 5/87 (5%)
Strand = Plus / Plus
Query: 4 atttcattcgcgcctgtatcttgctgaaccgttaccattgtgacatccaa--atccggtt 61
||||||||||||||||||||||||||||||| | ||||| || | ||| ||||||||
Sbjct: 6 atttcattcgcgcctgtatcttgctgaaccgctgccattatggc---caacgatccggtt 62
Query: 62 gagcaaaatttcaggtgtgtgagaaat 88
|||||||||||||||||||||||||||
Sbjct: 63 gagcaaaatttcaggtgtgtgagaaat 89
>36852_dpe-mir-87:mirbase
Length = 93
Score = 87.7 bits (44), Expect = 1e-18
Identities = 80/92 (86%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccattgtgacatccaaatccggt 60
||||||||||||||||||||||||||||||||||| |||| || | | |||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgtagccataatggtctttcatcccggt 60
Query: 61 tgagcaaaatttcaggtgtgtgagaaatttgt 92
||||||||||||||||||||||||||||||||
Sbjct: 61 tgagcaaaatttcaggtgtgtgagaaatttgt 92
>36928_dps-mir-87:mirbase
Length = 98
Score = 87.7 bits (44), Expect = 1e-18
Identities = 80/92 (86%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccattgtgacatccaaatccggt 60
||||||||||||||||||||||||||||||||||| |||| || | | |||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgtagccataatggtctttcatcccggt 60
Query: 61 tgagcaaaatttcaggtgtgtgagaaatttgt 92
||||||||||||||||||||||||||||||||
Sbjct: 61 tgagcaaaatttcaggtgtgtgagaaatttgt 92
>37141_dse-mir-87:mirbase
Length = 92
Score = 83.8 bits (42), Expect = 2e-17
Identities = 77/87 (88%), Gaps = 5/87 (5%)
Strand = Plus / Plus
Query: 4 atttcattcgcgcctgtatcttgctgaaccgttaccattgtgacatccaa--atccggtt 61
||||||||||||||||||||||||||||||| | |||| || | ||| ||||||||
Sbjct: 4 atttcattcgcgcctgtatcttgctgaaccgctgccatcatggc---caacgatccggtt 60
Query: 62 gagcaaaatttcaggtgtgtgagaaat 88
|||||||||||||||||||||||||||
Sbjct: 61 gagcaaaatttcaggtgtgtgagaaat 87
>37216_dsi-mir-87:mirbase
Length = 92
Score = 83.8 bits (42), Expect = 2e-17
Identities = 77/87 (88%), Gaps = 5/87 (5%)
Strand = Plus / Plus
Query: 4 atttcattcgcgcctgtatcttgctgaaccgttaccattgtgacatccaa--atccggtt 61
||||||||||||||||||||||||||||||| | |||| || | ||| ||||||||
Sbjct: 4 atttcattcgcgcctgtatcttgctgaaccgctgccatcatggc---caacgatccggtt 60
Query: 62 gagcaaaatttcaggtgtgtgagaaat 88
|||||||||||||||||||||||||||
Sbjct: 61 gagcaaaatttcaggtgtgtgagaaat 87
>35361_ame-mir-87-1:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 61 tgagcaaaatttcaggtgtgtgag 84
|||||||| |||||||||||||||
Sbjct: 71 tgagcaaagtttcaggtgtgtgag 94
