miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36786_dmo-mir-184:mirbase
          Length = 98

 Score =  151 bits (76), Expect = 1e-37
 Identities = 85/88 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccggtgcattcgtacccttatcattctctcgccccgtgtggataactatacaactggacg 60
          |||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||
Sbjct: 5  ccggtgcattcgtacccttatcattctcgcgccccgtgtgcatatctatacaactggacg 64

                                      
Query: 61 gagaactgataagggctcgtatcaccaa 88
          ||||||||||||||||||||||||||||
Sbjct: 65 gagaactgataagggctcgtatcaccaa 92




>37362_dvi-mir-184:mirbase
          Length = 98

 Score =  143 bits (72), Expect = 2e-35
 Identities = 84/88 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccggtgcattcgtacccttatcattctctcgccccgtgtggataactatacaactggacg 60
          |||||||||||||||||||||||||||| ||||||||||| ||| ||| |||||||||||
Sbjct: 5  ccggtgcattcgtacccttatcattctcgcgccccgtgtgcatatctagacaactggacg 64

                                      
Query: 61 gagaactgataagggctcgtatcaccaa 88
          ||||||||||||||||||||||||||||
Sbjct: 65 gagaactgataagggctcgtatcaccaa 92




>37441_dwi-mir-184:mirbase
          Length = 88

 Score =  143 bits (72), Expect = 2e-35
 Identities = 84/88 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccggtgcattcgtacccttatcattctctcgccccgtgtggataactatacaactggacg 60
          |||||||||||||||||||||||||||| ||||||||||| ||| ||| |||||||||||
Sbjct: 1  ccggtgcattcgtacccttatcattctcgcgccccgtgtgcatatctagacaactggacg 60

                                      
Query: 61 gagaactgataagggctcgtatcaccaa 88
          ||||||||||||||||||||||||||||
Sbjct: 61 gagaactgataagggctcgtatcaccaa 88




>36110_dan-mir-184:mirbase
          Length = 88

 Score =  135 bits (68), Expect = 6e-33
 Identities = 83/88 (94%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccggtgcattcgtacccttatcattctctcgccccgtgtggataactatacaactggacg 60
          |||||||||||||||||||||||||||| ||||||||||| ||||  | |||||||||||
Sbjct: 1  ccggtgcattcgtacccttatcattctcgcgccccgtgtgcataatgagacaactggacg 60

                                      
Query: 61 gagaactgataagggctcgtatcaccaa 88
          ||||||||||||||||||||||||||||
Sbjct: 61 gagaactgataagggctcgtatcaccaa 88




>36188_der-mir-184:mirbase
          Length = 88

 Score =  127 bits (64), Expect = 1e-30
 Identities = 82/88 (93%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccggtgcattcgtacccttatcattctctcgccccgtgtggataactatacaactggacg 60
          |||||||||||||||||||||||||||||||||||||||| ||    | |||||||||||
Sbjct: 1  ccggtgcattcgtacccttatcattctctcgccccgtgtgcatttaaagacaactggacg 60

                                      
Query: 61 gagaactgataagggctcgtatcaccaa 88
          ||||||||||||||||||||||||||||
Sbjct: 61 gagaactgataagggctcgtatcaccaa 88




>36862_dpe-mir-184:mirbase
          Length = 88

 Score =  127 bits (64), Expect = 1e-30
 Identities = 82/88 (93%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccggtgcattcgtacccttatcattctctcgccccgtgtggataactatacaactggacg 60
          |||||||||||||||||||||||||||| ||||||||||| || |  | |||||||||||
Sbjct: 1  ccggtgcattcgtacccttatcattctcgcgccccgtgtgcattaaaagacaactggacg 60

                                      
Query: 61 gagaactgataagggctcgtatcaccaa 88
          ||||||||||||||||||||||||||||
Sbjct: 61 gagaactgataagggctcgtatcaccaa 88




>36937_dps-mir-184:mirbase
          Length = 100

 Score =  127 bits (64), Expect = 1e-30
 Identities = 82/88 (93%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccggtgcattcgtacccttatcattctctcgccccgtgtggataactatacaactggacg 60
          |||||||||||||||||||||||||||| ||||||||||| || |  | |||||||||||
Sbjct: 7  ccggtgcattcgtacccttatcattctcgcgccccgtgtgcattaaaagacaactggacg 66

                                      
Query: 61 gagaactgataagggctcgtatcaccaa 88
          ||||||||||||||||||||||||||||
Sbjct: 67 gagaactgataagggctcgtatcaccaa 94




>37148_dse-mir-184:mirbase
          Length = 88

 Score =  127 bits (64), Expect = 1e-30
 Identities = 82/88 (93%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccggtgcattcgtacccttatcattctctcgccccgtgtggataactatacaactggacg 60
          |||||||||||||||||||||||||||||||||||||||| ||    | |||||||||||
Sbjct: 1  ccggtgcattcgtacccttatcattctctcgccccgtgtgcatttaaagacaactggacg 60

                                      
Query: 61 gagaactgataagggctcgtatcaccaa 88
          ||||||||||||||||||||||||||||
Sbjct: 61 gagaactgataagggctcgtatcaccaa 88




>37224_dsi-mir-184:mirbase
          Length = 88

 Score =  127 bits (64), Expect = 1e-30
 Identities = 82/88 (93%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccggtgcattcgtacccttatcattctctcgccccgtgtggataactatacaactggacg 60
          |||||||||||||||||||||||||||||||||||||||| ||    | |||||||||||
Sbjct: 1  ccggtgcattcgtacccttatcattctctcgccccgtgtgcatttaaagacaactggacg 60

                                      
Query: 61 gagaactgataagggctcgtatcaccaa 88
          ||||||||||||||||||||||||||||
Sbjct: 61 gagaactgataagggctcgtatcaccaa 88




>36393_dme-mir-184:mirbase
          Length = 100

 Score =  119 bits (60), Expect = 3e-28
 Identities = 81/88 (92%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccggtgcattcgtacccttatcattctctcgccccgtgtggataactatacaactggacg 60
          |||||||||||||||||||||||||||||||||||||||| |     | |||||||||||
Sbjct: 7  ccggtgcattcgtacccttatcattctctcgccccgtgtgcacttaaagacaactggacg 66

                                      
Query: 61 gagaactgataagggctcgtatcaccaa 88
          ||||||||||||||||||||||||||||
Sbjct: 67 gagaactgataagggctcgtatcaccaa 94




>36394_dme-mir-184:mirbase
          Length = 100

 Score =  119 bits (60), Expect = 3e-28
 Identities = 81/88 (92%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccggtgcattcgtacccttatcattctctcgccccgtgtggataactatacaactggacg 60
          |||||||||||||||||||||||||||||||||||||||| |     | |||||||||||
Sbjct: 7  ccggtgcattcgtacccttatcattctctcgccccgtgtgcacttaaagacaactggacg 66

                                      
Query: 61 gagaactgataagggctcgtatcaccaa 88
          ||||||||||||||||||||||||||||
Sbjct: 67 gagaactgataagggctcgtatcaccaa 94




>37516_dya-mir-184:mirbase
          Length = 87

 Score =  119 bits (60), Expect = 3e-28
 Identities = 82/88 (93%), Gaps = 1/88 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccggtgcattcgtacccttatcattctctcgccccgtgtggataactatacaactggacg 60
          |||||||||||||||||||||||||||||||||||||||| ||    | |||||||||||
Sbjct: 1  ccggtgcattcgtacccttatcattctctcgccccgtgtgcat-tgaagacaactggacg 59

                                      
Query: 61 gagaactgataagggctcgtatcaccaa 88
          ||||||||||||||||||||||||||||
Sbjct: 60 gagaactgataagggctcgtatcaccaa 87




>35293_aga-mir-184:mirbase
          Length = 82

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 66/74 (89%), Gaps = 2/74 (2%)
 Strand = Plus / Plus

                                                                      
Query: 3  ggtgcattcgtacccttatcattctctcgccccgtgtggataactatacaactggacgga 62
          |||||| ||| |||||||||||||| ||||||||||||  |  ||| |||||||||||||
Sbjct: 1  ggtgcactcgaacccttatcattctttcgccccgtgtgcttt-cta-acaactggacgga 58

                        
Query: 63 gaactgataagggc 76
          ||||||||||||||
Sbjct: 59 gaactgataagggc 72




>35065_api-mir-184a:mirbase
          Length = 65

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 50 acaactggacggagaactgataagggctcgtat 82
          |||||||||||||||||||||||||||| ||||
Sbjct: 33 acaactggacggagaactgataagggctggtat 65




>37747_tca-mir-184:mirbase
          Length = 79

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 50 acaactggacggagaactgataagggct 77
          ||||||||||||||||||||||||||||
Sbjct: 44 acaactggacggagaactgataagggct 71




>37748_tca-mir-184:mirbase
          Length = 79

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 50 acaactggacggagaactgataagggct 77
          ||||||||||||||||||||||||||||
Sbjct: 44 acaactggacggagaactgataagggct 71




>35196_aae-mir-184:mirbase
          Length = 88

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                 
Query: 1  ccggtgcattcgtacccttatcattctctcgccccgtgt 39
          |||||| ||||||||||||||||||||  ||||||||||
Sbjct: 1  ccggtgtattcgtacccttatcattcttgcgccccgtgt 39



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 53 actggacggagaactgataagggc 76
          ||||||||||||||||||||||||
Sbjct: 53 actggacggagaactgataagggc 76




>38873_lgi-mir-184:mirbase
          Length = 101

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 52 aactggacggagaactgataagggct 77
          ||||||||||||||||||||||||||
Sbjct: 58 aactggacggagaactgataagggct 83




>38757_cte-mir-184a:mirbase
          Length = 101

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 53 actggacggagaactgataagggc 76
          ||||||||||||||||||||||||
Sbjct: 59 actggacggagaactgataagggc 82




>24844_cin-mir-184:mirbase
          Length = 102

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 55 tggacggagaactgataagggctc 78
          ||||||||||||||||||||||||
Sbjct: 66 tggacggagaactgataagggctc 89




>34829_spu-mir-184:mirbase
          Length = 101

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 54 ctggacggagaactgataagggct 77
          ||||||||||||||||||||||||
Sbjct: 60 ctggacggagaactgataagggct 83




>34885_sko-mir-184:mirbase
          Length = 101

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 54 ctggacggagaactgataagggct 77
          ||||||||||||||||||||||||
Sbjct: 60 ctggacggagaactgataagggct 83




>34975_isc-mir-184:mirbase
          Length = 101

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 54 ctggacggagaactgataagggct 77
          ||||||||||||||||||||||||
Sbjct: 60 ctggacggagaactgataagggct 83




>35371_ame-mir-184:mirbase
          Length = 92

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 53 actggacggagaactgataagggc 76
          ||||||||||||||||||||||||
Sbjct: 54 actggacggagaactgataagggc 77




>35541_bmo-mir-184:mirbase
          Length = 84

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 53 actggacggagaactgataagggc 76
          ||||||||||||||||||||||||
Sbjct: 50 actggacggagaactgataagggc 73




>36025_cqu-mir-184:mirbase
          Length = 85

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 8  attcgtacccttatcattctctcgccccgtgt 39
          ||||| |||||||||||||| |||||||||||
Sbjct: 5  attcgcacccttatcattctttcgccccgtgt 36



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 53 actggacggagaactgataagggc 76
          ||||||||||||||||||||||||
Sbjct: 50 actggacggagaactgataagggc 73




>37581_ngi-mir-184:mirbase
          Length = 89

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 53 actggacggagaactgataagggc 76
          ||||||||||||||||||||||||
Sbjct: 52 actggacggagaactgataagggc 75




>37613_nlo-mir-184:mirbase
          Length = 89

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 53 actggacggagaactgataagggc 76
          ||||||||||||||||||||||||
Sbjct: 52 actggacggagaactgataagggc 75




>37653_nvi-mir-184:mirbase
          Length = 92

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 53 actggacggagaactgataagggc 76
          ||||||||||||||||||||||||
Sbjct: 54 actggacggagaactgataagggc 77




>24688_bfl-mir-184:mirbase
          Length = 101

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 54 ctggacggagaactgataagggc 76
          |||||||||||||||||||||||
Sbjct: 60 ctggacggagaactgataagggc 82




>34335_dre-mir-184:mirbase
          Length = 87

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 55 tggacggagaactgataagggc 76
          ||||||||||||||||||||||
Sbjct: 55 tggacggagaactgataagggc 76




>34336_dre-mir-184-2:mirbase
          Length = 79

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 55 tggacggagaactgataagggc 76
          ||||||||||||||||||||||
Sbjct: 49 tggacggagaactgataagggc 70




>35066_api-mir-184b:mirbase
          Length = 60

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 47 tatacaactggacggagaactgataa 72
          ||||| ||||||||||||||||||||
Sbjct: 31 tatactactggacggagaactgataa 56




>25979_gga-mir-184:mirbase
          Length = 74

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 tggacggagaactgataaggg 75
          |||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73




>26487_tgu-mir-184:mirbase
          Length = 112

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 55  tggacggagaactgataaggg 75
           |||||||||||||||||||||
Sbjct: 81  tggacggagaactgataaggg 101




>26739_cfa-mir-184:mirbase
          Length = 68

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 tggacggagaactgataaggg 75
          |||||||||||||||||||||
Sbjct: 42 tggacggagaactgataaggg 62




>27065_eca-mir-184:mirbase
          Length = 70

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 tggacggagaactgataaggg 75
          |||||||||||||||||||||
Sbjct: 46 tggacggagaactgataaggg 66




>27408_mdo-mir-184:mirbase
          Length = 84

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 tggacggagaactgataaggg 75
          |||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73




>27775_mml-mir-184:mirbase
          Length = 84

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 tggacggagaactgataaggg 75
          |||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73




>28225_mne-mir-184:mirbase
          Length = 84

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 tggacggagaactgataaggg 75
          |||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73




>28491_hsa-mir-184:mirbase
          Length = 84

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 tggacggagaactgataaggg 75
          |||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73




>30259_ptr-mir-184:mirbase
          Length = 84

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 tggacggagaactgataaggg 75
          |||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73




>30873_ppy-mir-184:mirbase
          Length = 84

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 tggacggagaactgataaggg 75
          |||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73




>31900_mmu-mir-184:mirbase
          Length = 69

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 tggacggagaactgataaggg 75
          |||||||||||||||||||||
Sbjct: 45 tggacggagaactgataaggg 65




>32770_rno-mir-184:mirbase
          Length = 77

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 tggacggagaactgataaggg 75
          |||||||||||||||||||||
Sbjct: 47 tggacggagaactgataaggg 67




>33252_bta-mir-184:mirbase
          Length = 83

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 tggacggagaactgataaggg 75
          |||||||||||||||||||||
Sbjct: 52 tggacggagaactgataaggg 72




>34014_ssc-mir-184:mirbase
          Length = 83

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 tggacggagaactgataaggg 75
          |||||||||||||||||||||
Sbjct: 52 tggacggagaactgataaggg 72




>34616_fru-mir-184:mirbase
          Length = 73

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 tggacggagaactgataaggg 75
          |||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73




>34763_tni-mir-184:mirbase
          Length = 73

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 tggacggagaactgataaggg 75
          |||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73




>25809_xtr-mir-184:mirbase
          Length = 83

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 55 tggacggagaactgataagg 74
          ||||||||||||||||||||
Sbjct: 53 tggacggagaactgataagg 72