miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37363_dvi-mir-210:mirbase
Length = 84
Score = 125 bits (63), Expect = 5e-30
Identities = 78/82 (95%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 5 cttattggagctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtgac 64
||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 5 cttattgcagctgctggccactgcacaagattagactcaa--gactcttgtgcgtgtgac 62
Query: 65 agcggctattgtaagagaccag 86
||||||||||||||||||||||
Sbjct: 63 agcggctattgtaagagaccag 84
>36787_dmo-mir-210:mirbase
Length = 86
Score = 115 bits (58), Expect = 5e-27
Identities = 73/77 (94%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 4 gcttattggagctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtga 63
|||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 6 gcttattgcagctgctggccactgcacaagattagactcaa--gactcttgtgcgtgtga 63
Query: 64 cagcggctattgtaaga 80
|||||||||||||||||
Sbjct: 64 cagcggctattgtaaga 80
>36863_dpe-mir-210:mirbase
Length = 84
Score = 115 bits (58), Expect = 5e-27
Identities = 73/77 (94%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 5 cttattggagctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtgac 64
||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 5 cttattgcagctgctggccactgcacaagattagatttaa--gactcttgtgcgtgtgac 62
Query: 65 agcggctattgtaagag 81
|||||||||||||||||
Sbjct: 63 agcggctattgtaagag 79
>36940_dps-mir-210a:mirbase
Length = 94
Score = 115 bits (58), Expect = 5e-27
Identities = 73/77 (94%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 5 cttattggagctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtgac 64
||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 5 cttattgcagctgctggccactgcacaagattagatttaa--gactcttgtgcgtgtgac 62
Query: 65 agcggctattgtaagag 81
|||||||||||||||||
Sbjct: 63 agcggctattgtaagag 79
>36941_dps-mir-210b:mirbase
Length = 109
Score = 115 bits (58), Expect = 5e-27
Identities = 73/77 (94%), Gaps = 2/77 (2%)
Strand = Plus / Minus
Query: 5 cttattggagctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtgac 64
||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 90 cttattgcagctgctggccactgcacaagattagatttaa--gactcttgtgcgtgtgac 33
Query: 65 agcggctattgtaagag 81
|||||||||||||||||
Sbjct: 32 agcggctattgtaagag 16
>36111_dan-mir-210:mirbase
Length = 86
Score = 109 bits (55), Expect = 3e-25
Identities = 73/78 (93%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 4 gcttattggagctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtga 63
|||||||| ||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct: 6 gcttattgcagctgctggccactgcacaagattagacttaa--gactcttgtgcgtgtga 63
Query: 64 cagcggctattgtaagag 81
||||||||||||||||||
Sbjct: 64 cagcggctattgtaagag 81
>36189_der-mir-210:mirbase
Length = 86
Score = 109 bits (55), Expect = 3e-25
Identities = 73/78 (93%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 4 gcttattggagctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtga 63
|||||||| ||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct: 6 gcttattgcagctgctggccactgcacaagattagacttaa--gactcttgtgcgtgtga 63
Query: 64 cagcggctattgtaagag 81
||||||||||||||||||
Sbjct: 64 cagcggctattgtaagag 81
>36399_dme-mir-210:mirbase
Length = 100
Score = 109 bits (55), Expect = 3e-25
Identities = 73/78 (93%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 4 gcttattggagctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtga 63
|||||||| ||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct: 7 gcttattgcagctgctggccactgcacaagattagacttaa--gactcttgtgcgtgtga 64
Query: 64 cagcggctattgtaagag 81
||||||||||||||||||
Sbjct: 65 cagcggctattgtaagag 82
>36400_dme-mir-210:mirbase
Length = 100
Score = 109 bits (55), Expect = 3e-25
Identities = 73/78 (93%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 4 gcttattggagctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtga 63
|||||||| ||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct: 7 gcttattgcagctgctggccactgcacaagattagacttaa--gactcttgtgcgtgtga 64
Query: 64 cagcggctattgtaagag 81
||||||||||||||||||
Sbjct: 65 cagcggctattgtaagag 82
>37149_dse-mir-210:mirbase
Length = 86
Score = 109 bits (55), Expect = 3e-25
Identities = 73/78 (93%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 4 gcttattggagctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtga 63
|||||||| ||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct: 6 gcttattgcagctgctggccactgcacaagattagacttaa--gactcttgtgcgtgtga 63
Query: 64 cagcggctattgtaagag 81
||||||||||||||||||
Sbjct: 64 cagcggctattgtaagag 81
>37227_dsi-mir-210:mirbase
Length = 86
Score = 109 bits (55), Expect = 3e-25
Identities = 73/78 (93%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 4 gcttattggagctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtga 63
|||||||| ||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct: 6 gcttattgcagctgctggccactgcacaagattagacttaa--gactcttgtgcgtgtga 63
Query: 64 cagcggctattgtaagag 81
||||||||||||||||||
Sbjct: 64 cagcggctattgtaagag 81
>37442_dwi-mir-210:mirbase
Length = 86
Score = 109 bits (55), Expect = 3e-25
Identities = 76/82 (92%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 5 cttattggagctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtgac 64
||||||| ||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct: 7 cttattgcagctgctggccactgcacaagattagacttaa--gactcttgtgcgtgtgac 64
Query: 65 agcggctattgtaagagaccag 86
||||||||||||||||| ||||
Sbjct: 65 agcggctattgtaagaggccag 86
>37517_dya-mir-210:mirbase
Length = 86
Score = 107 bits (54), Expect = 1e-24
Identities = 72/77 (93%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 5 cttattggagctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtgac 64
||||||| ||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct: 7 cttattgcagctgctggccactgcacaagattagacttaa--gactcttgtgcgtgtgac 64
Query: 65 agcggctattgtaagag 81
|||||||||||||||||
Sbjct: 65 agcggctattgtaagag 81
>35374_ame-mir-210:mirbase
Length = 85
Score = 91.7 bits (46), Expect = 8e-20
Identities = 58/61 (95%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 13 agctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtgacagcggcta 72
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 14 agctgctggccactgcacaagattaga--cataagactcttgtgcgtgtgacagcggcta 71
Query: 73 t 73
|
Sbjct: 72 t 72
>37582_ngi-mir-210:mirbase
Length = 85
Score = 91.7 bits (46), Expect = 8e-20
Identities = 58/61 (95%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 13 agctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtgacagcggcta 72
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 14 agctgctggccactgcacaagattaga--cataagactcttgtgcgtgtgacagcggcta 71
Query: 73 t 73
|
Sbjct: 72 t 72
>37655_nvi-mir-210:mirbase
Length = 85
Score = 91.7 bits (46), Expect = 8e-20
Identities = 58/61 (95%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 13 agctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtgacagcggcta 72
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 14 agctgctggccactgcacaagattaga--cataagactcttgtgcgtgtgacagcggcta 71
Query: 73 t 73
|
Sbjct: 72 t 72
>37564_lmi-mir-210:mirbase
Length = 62
Score = 79.8 bits (40), Expect = 3e-16
Identities = 59/63 (93%), Gaps = 3/63 (4%)
Strand = Plus / Plus
Query: 13 agctgctggccactgcacaagattag--attcaaaagactcttgtgcgtgtgacagcggc 70
||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 1 agctgctggacactgcacaagattagcgatt-aaaagactcttgtgcgtgtgacagcggc 59
Query: 71 tat 73
|||
Sbjct: 60 tat 62
>35199_aae-mir-210:mirbase
Length = 68
Score = 75.8 bits (38), Expect = 4e-15
Identities = 61/68 (89%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 8 attggagctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtgacagc 67
|||| |||||||| |||||||||||||||||||| | ||||||||||||||||||| |
Sbjct: 4 attgcagctgctgaccactgcacaagattagatt---atgactcttgtgcgtgtgacaac 60
Query: 68 ggctattg 75
||||||||
Sbjct: 61 ggctattg 68
>36028_cqu-mir-210:mirbase
Length = 68
Score = 75.8 bits (38), Expect = 4e-15
Identities = 61/68 (89%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 8 attggagctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtgacagc 67
|||| |||||||| |||||||||||||||||||| | ||||||||||||||||||| |
Sbjct: 4 attgcagctgctgaccactgcacaagattagatt---atgactcttgtgcgtgtgacaac 60
Query: 68 ggctattg 75
||||||||
Sbjct: 61 ggctattg 68
>35543_bmo-mir-210:mirbase
Length = 92
Score = 65.9 bits (33), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 5/66 (7%)
Strand = Plus / Plus
Query: 13 agctgctggccactgcacaagattagattcaaa---agactcttgtgcgtgtgacagcgg 69
|||||||||||||||||||||||||| |||| | ||||||||||||||||||||||
Sbjct: 16 agctgctggccactgcacaagattag--tcaagtttatactcttgtgcgtgtgacagcgg 73
Query: 70 ctattg 75
||||||
Sbjct: 74 ctattg 79
>35295_aga-mir-210:mirbase
Length = 80
Score = 58.0 bits (29), Expect = 1e-09
Identities = 58/67 (86%), Gaps = 3/67 (4%)
Strand = Plus / Plus
Query: 8 attggagctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtgacagc 67
|||| |||||||| |||||||||||||||||| | ||||||||||||||||||| |
Sbjct: 8 attgcagctgctgaccactgcacaagattaga---atgcgactcttgtgcgtgtgacaac 64
Query: 68 ggctatt 74
|||||||
Sbjct: 65 ggctatt 71
>37753_tca-mir-210:mirbase
Length = 76
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 48 actcttgtgcgtgtgacagcggctattgt 76
|||||||||||||||||||||||||||||
Sbjct: 45 actcttgtgcgtgtgacagcggctattgt 73
>37754_tca-mir-210:mirbase
Length = 76
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 48 actcttgtgcgtgtgacagcggctattgt 76
|||||||||||||||||||||||||||||
Sbjct: 45 actcttgtgcgtgtgacagcggctattgt 73
>25831_xtr-mir-210:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggcta 72
||||||||||||||||||||
Sbjct: 57 tgtgcgtgtgacagcggcta 76
>27426_mdo-mir-210:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggcta 72
||||||||||||||||||||
Sbjct: 50 tgtgcgtgtgacagcggcta 69
>34366_dre-mir-210:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggcta 72
||||||||||||||||||||
Sbjct: 49 tgtgcgtgtgacagcggcta 68
>34634_fru-mir-210:mirbase
Length = 98
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggcta 72
||||||||||||||||||||
Sbjct: 56 tgtgcgtgtgacagcggcta 75
>34782_tni-mir-210:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggcta 72
||||||||||||||||||||
Sbjct: 48 tgtgcgtgtgacagcggcta 67
>24695_bfl-mir-210:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 62 tgtgcgtgtgacagcggct 80
>25526_pma-mir-210:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 49 tgtgcgtgtgacagcggct 67
>26770_cfa-mir-210:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 56 tgtgcgtgtgacagcggct 74
>27806_mml-mir-210:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>28528_hsa-mir-210:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>30287_ptr-mir-210:mirbase
Length = 109
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>31937_mmu-mir-210:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>32801_rno-mir-210:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>33068_rno-mir-3574:mirbase
Length = 118
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 50 tgtgcgtgtgacagcggct 32
>33287_bta-mir-210:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 56 tgtgcgtgtgacagcggct 74
>34038_ssc-mir-210:mirbase
Length = 76
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 49 tgtgcgtgtgacagcggct 67
