miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37368_dvi-mir-275:mirbase
Length = 92
Score = 157 bits (79), Expect = 2e-39
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 5 tttaccgcgcgcgctaatcagtgaccggggctggttttgattatcccacagtcaggtacc 64
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 5 tttaccgtgcgcgctaatcagtgaccggggctggttttggttatcccacagtcaggtacc 64
Query: 65 tgaagtagcgcgcgtggtggccagacg 91
|||||||||||||||||||||||||||
Sbjct: 65 tgaagtagcgcgcgtggtggccagacg 91
>36791_dmo-mir-275:mirbase
Length = 92
Score = 143 bits (72), Expect = 2e-35
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 5 tttaccgcgcgcgctaatcagtgaccggggctggttttgattatcccacagtcaggtacc 64
||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 5 tttaccgtgcgcgctaatcagtgaccggggctggtttcgattatctcacagtcaggtacc 64
Query: 65 tgaagtagcgcgcgtggtggccagacgc 92
||||||||||||||||||||| ||||||
Sbjct: 65 tgaagtagcgcgcgtggtggctagacgc 92
>36411_dme-mir-275:mirbase
Length = 98
Score = 93.7 bits (47), Expect = 2e-20
Identities = 67/73 (91%), Gaps = 3/73 (4%)
Strand = Plus / Plus
Query: 13 gcgcgctaatcagtgaccggggctggttttgattatcccacagtcaggtacctgaagtag 72
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 19 gcgcgctaatcagtgaccggggctggttttttatat---acagtcaggtacctgaagtag 75
Query: 73 cgcgcgtggtggc 85
|||||||||||||
Sbjct: 76 cgcgcgtggtggc 88
>36412_dme-mir-275:mirbase
Length = 98
Score = 93.7 bits (47), Expect = 2e-20
Identities = 67/73 (91%), Gaps = 3/73 (4%)
Strand = Plus / Plus
Query: 13 gcgcgctaatcagtgaccggggctggttttgattatcccacagtcaggtacctgaagtag 72
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 19 gcgcgctaatcagtgaccggggctggttttttatat---acagtcaggtacctgaagtag 75
Query: 73 cgcgcgtggtggc 85
|||||||||||||
Sbjct: 76 cgcgcgtggtggc 88
>37232_dsi-mir-275:mirbase
Length = 90
Score = 93.7 bits (47), Expect = 2e-20
Identities = 67/73 (91%), Gaps = 3/73 (4%)
Strand = Plus / Plus
Query: 13 gcgcgctaatcagtgaccggggctggttttgattatcccacagtcaggtacctgaagtag 72
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 15 gcgcgctaatcagtgaccggggctggttttttatat---acagtcaggtacctgaagtag 71
Query: 73 cgcgcgtggtggc 85
|||||||||||||
Sbjct: 72 cgcgcgtggtggc 84
>36116_dan-mir-275:mirbase
Length = 87
Score = 89.7 bits (45), Expect = 3e-19
Identities = 66/73 (90%), Gaps = 5/73 (6%)
Strand = Plus / Plus
Query: 13 gcgcgctaatcagtgaccggggctggttttgattatcccacagtcaggtacctgaagtag 72
|||||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct: 14 gcgcgctaatcagtgaccggggctggtttt-----tgcaacagtcaggtacctgaagtag 68
Query: 73 cgcgcgtggtggc 85
|||||||||||||
Sbjct: 69 cgcgcgtggtggc 81
>36194_der-mir-275:mirbase
Length = 90
Score = 89.7 bits (45), Expect = 3e-19
Identities = 65/71 (91%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 13 gcgcgctaatcagtgaccggggctggttttgattatcccacagtcaggtacctgaagtag 72
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 15 gcgcgctaatcagtgaccggggctggttttttatat---acagtcaggtacctgaagtag 71
Query: 73 cgcgcgtggtg 83
|||||||||||
Sbjct: 72 cgcgcgtggtg 82
>37523_dya-mir-275:mirbase
Length = 90
Score = 89.7 bits (45), Expect = 3e-19
Identities = 65/71 (91%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 13 gcgcgctaatcagtgaccggggctggttttgattatcccacagtcaggtacctgaagtag 72
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 15 gcgcgctaatcagtgaccggggctggttttttatat---acagtcaggtacctgaagtag 71
Query: 73 cgcgcgtggtg 83
|||||||||||
Sbjct: 72 cgcgcgtggtg 82
>37154_dse-mir-275:mirbase
Length = 90
Score = 85.7 bits (43), Expect = 5e-18
Identities = 66/73 (90%), Gaps = 3/73 (4%)
Strand = Plus / Plus
Query: 13 gcgcgctaatcagtgaccggggctggttttgattatcccacagtcaggtacctgaagtag 72
|||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||
Sbjct: 15 gcgcgctaatcagtgaccggggcttgttttttatat---acagtcaggtacctgaagtag 71
Query: 73 cgcgcgtggtggc 85
|||||||||||||
Sbjct: 72 cgcgcgtggtggc 84
>36868_dpe-mir-275:mirbase
Length = 89
Score = 65.9 bits (33), Expect = 5e-12
Identities = 62/71 (87%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 13 gcgcgctaatcagtgaccggggctggttttgattatcccacagtcaggtacctgaagtag 72
||||||||||||| |||||||||||||||| | | ||||||||||||||||||||
Sbjct: 15 gcgcgctaatcagagaccggggctggtttt---ttcactgcagtcaggtacctgaagtag 71
Query: 73 cgcgcgtggtg 83
|||||||||||
Sbjct: 72 cgcgcgtggtg 82
>36947_dps-mir-275:mirbase
Length = 90
Score = 65.9 bits (33), Expect = 5e-12
Identities = 62/71 (87%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 13 gcgcgctaatcagtgaccggggctggttttgattatcccacagtcaggtacctgaagtag 72
||||||||||||| |||||||||||||||| | | ||||||||||||||||||||
Sbjct: 16 gcgcgctaatcagagaccggggctggtttt---ttcactgcagtcaggtacctgaagtag 72
Query: 73 cgcgcgtggtg 83
|||||||||||
Sbjct: 73 cgcgcgtggtg 83
>37447_dwi-mir-275:mirbase
Length = 93
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 52 acagtcaggtacctgaagtagcgcgcgtggt 82
|||||||||||||||||||||||||||||||
Sbjct: 54 acagtcaggtacctgaagtagcgcgcgtggt 84
>35204_aae-mir-275:mirbase
Length = 83
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 cagtcaggtacctgaagtagcgcgcgtg 80
||||||||||||||||||||||||||||
Sbjct: 53 cagtcaggtacctgaagtagcgcgcgtg 80
>36031_cqu-mir-275:mirbase
Length = 101
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 cagtcaggtacctgaagtagcgcgcgtg 80
||||||||||||||||||||||||||||
Sbjct: 59 cagtcaggtacctgaagtagcgcgcgtg 86
>35299_aga-mir-275:mirbase
Length = 95
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 53 cagtcaggtacctgaagtagcgcgcgt 79
|||||||||||||||||||||||||||
Sbjct: 58 cagtcaggtacctgaagtagcgcgcgt 84
>35379_ame-mir-275:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 cagtcaggtacctgaagtagcgcgcg 78
||||||||||||||||||||||||||
Sbjct: 64 cagtcaggtacctgaagtagcgcgcg 89
>34979_isc-mir-275:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 59 agtcaggtacctgaagtagcgcgcg 83
>35021_dpu-mir-275:mirbase
Length = 103
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 59 agtcaggtacctgaagtagcgcgcg 83
>35548_bmo-mir-275:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 49 agtcaggtacctgaagtagcgcgcg 73
>37586_ngi-mir-275:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 42 agtcaggtacctgaagtagcgcgcg 66
>37617_nlo-mir-275:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 42 agtcaggtacctgaagtagcgcgcg 66
>37659_nvi-mir-275:mirbase
Length = 94
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 59 agtcaggtacctgaagtagcgcgcg 83
>37765_tca-mir-275:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 43 agtcaggtacctgaagtagcgcgcg 67
>37766_tca-mir-275:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 43 agtcaggtacctgaagtagcgcgcg 67
>35075_api-mir-275:mirbase
Length = 62
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcg 76
|||||||||||||||||||||||
Sbjct: 40 agtcaggtacctgaagtagcgcg 62
