miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36798_dmo-mir-281-1:mirbase
Length = 88
Score = 143 bits (72), Expect = 2e-35
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagtataaattttaatactgtca 60
|||||||||||||||||||||||||||||||||||||||||| | ||| ||| |||||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagtaaagattgtaaaactgtca 60
Query: 61 tggaattgctctctttgtatgatattcg 88
||||||||||||||||||||||||||||
Sbjct: 61 tggaattgctctctttgtatgatattcg 88
>37375_dvi-mir-281-1:mirbase
Length = 88
Score = 143 bits (72), Expect = 2e-35
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagtataaattttaatactgtca 60
|||||||||||||||||||||||||||||||||||||||||| || | |||||||||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagtaacaaatgtaatactgtca 60
Query: 61 tggaattgctctctttgtatgatattcg 88
||||||||||||||||||||||||||||
Sbjct: 61 tggaattgctctctttgtatgatattcg 88
>37454_dwi-mir-281-1:mirbase
Length = 90
Score = 133 bits (67), Expect = 2e-32
Identities = 85/90 (94%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagtataa--attttaatactgt 58
||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagttaaacgattttaaaactgt 60
Query: 59 catggaattgctctctttgtatgatattcg 88
||||||||||||||||||||||||||||||
Sbjct: 61 catggaattgctctctttgtatgatattcg 90
>37530_dya-mir-281-1:mirbase
Length = 90
Score = 109 bits (55), Expect = 3e-25
Identities = 82/90 (91%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagtataaattt--taatactgt 58
|||||||||||||||||||||||||||||||||||||||| || |||| || |||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagaattcatttaatatcactgt 60
Query: 59 catggaattgctctctttgtatgatattcg 88
|||||||||||||||||||||| |||||||
Sbjct: 61 catggaattgctctctttgtataatattcg 90
>36875_dpe-mir-281-1:mirbase
Length = 88
Score = 105 bits (53), Expect = 5e-24
Identities = 82/89 (92%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtcca-gtataaattttaatactgtc 59
|||||| |||||||||||||||||||||||||||||| | ||| || ||||||||||||
Sbjct: 1 cgaataggtgaataaagagagctgtccgtcgacagtcaacgtaccaa-tttaatactgtc 59
Query: 60 atggaattgctctctttgtatgatattcg 88
||||||||||||||||||||| |||||||
Sbjct: 60 atggaattgctctctttgtataatattcg 88
>36955_dps-mir-281-1:mirbase
Length = 88
Score = 105 bits (53), Expect = 5e-24
Identities = 82/89 (92%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtcca-gtataaattttaatactgtc 59
|||||| |||||||||||||||||||||||||||||| | ||| || ||||||||||||
Sbjct: 1 cgaataggtgaataaagagagctgtccgtcgacagtcaacgtaccaa-tttaatactgtc 59
Query: 60 atggaattgctctctttgtatgatattcg 88
||||||||||||||||||||| |||||||
Sbjct: 60 atggaattgctctctttgtataatattcg 88
>36201_der-mir-281-1:mirbase
Length = 90
Score = 101 bits (51), Expect = 8e-23
Identities = 81/90 (90%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagtataaattt--taatactgt 58
|||||||||||||||||||||||||||||||||||||||| | |||| || |||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagaaaccatttaatatcactgt 60
Query: 59 catggaattgctctctttgtatgatattcg 88
|||||||||||||||||||||| |||||||
Sbjct: 61 catggaattgctctctttgtataatattcg 90
>36424_dme-mir-281-1:mirbase
Length = 90
Score = 101 bits (51), Expect = 8e-23
Identities = 81/90 (90%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagtataaattt--taatactgt 58
|||||||||||||||||||||||||||||||||||||||| | |||| || |||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagaaactatttaatatcactgt 60
Query: 59 catggaattgctctctttgtatgatattcg 88
|||||||||||||||||||||| |||||||
Sbjct: 61 catggaattgctctctttgtataatattcg 90
>36425_dme-mir-281-1:mirbase
Length = 90
Score = 101 bits (51), Expect = 8e-23
Identities = 81/90 (90%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagtataaattt--taatactgt 58
|||||||||||||||||||||||||||||||||||||||| | |||| || |||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagaaactatttaatatcactgt 60
Query: 59 catggaattgctctctttgtatgatattcg 88
|||||||||||||||||||||| |||||||
Sbjct: 61 catggaattgctctctttgtataatattcg 90
>37161_dse-mir-281-1:mirbase
Length = 90
Score = 101 bits (51), Expect = 8e-23
Identities = 81/90 (90%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagtataaattt--taatactgt 58
|||||||||||||||||||||||||||||||||||||||| | |||| || |||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagaaaccatttaatatcactgt 60
Query: 59 catggaattgctctctttgtatgatattcg 88
|||||||||||||||||||||| |||||||
Sbjct: 61 catggaattgctctctttgtataatattcg 90
>37238_dsi-mir-281:mirbase
Length = 90
Score = 101 bits (51), Expect = 8e-23
Identities = 81/90 (90%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagtataaattt--taatactgt 58
|||||||||||||||||||||||||||||||||||||||| | |||| || |||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagaaagcatttaatatcactgt 60
Query: 59 catggaattgctctctttgtatgatattcg 88
|||||||||||||||||||||| |||||||
Sbjct: 61 catggaattgctctctttgtataatattcg 90
>36123_dan-mir-281-1:mirbase
Length = 86
Score = 95.6 bits (48), Expect = 5e-21
Identities = 80/88 (90%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagtataaattttaatactgtca 60
|||||| ||||||||||||||||||||||||||||||||| || | | ||| |||||||
Sbjct: 1 cgaatacgtgaataaagagagctgtccgtcgacagtccag-at-acctataacactgtca 58
Query: 61 tggaattgctctctttgtatgatattcg 88
|||||||||||||||||||| |||||||
Sbjct: 59 tggaattgctctctttgtataatattcg 86
>36876_dpe-mir-281-2:mirbase
Length = 91
Score = 83.8 bits (42), Expect = 2e-17
Identities = 73/81 (90%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 11 aataaagagagctgtccgtcgacagtccagt--ataa-attttaatactgtcatggaatt 67
||||||||||||| ||||||||||||| ||| || | ||| ||||||||||||||||||
Sbjct: 11 aataaagagagctatccgtcgacagtcaagttaatcagattgtaatactgtcatggaatt 70
Query: 68 gctctctttgtatgatattcg 88
||||||||||||| |||||||
Sbjct: 71 gctctctttgtataatattcg 91
>36956_dps-mir-281-2:mirbase
Length = 91
Score = 83.8 bits (42), Expect = 2e-17
Identities = 73/81 (90%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 11 aataaagagagctgtccgtcgacagtccagt--ataa-attttaatactgtcatggaatt 67
||||||||||||| ||||||||||||| ||| || | ||| ||||||||||||||||||
Sbjct: 11 aataaagagagctatccgtcgacagtcaagttaatcagattgtaatactgtcatggaatt 70
Query: 68 gctctctttgtatgatattcg 88
||||||||||||| |||||||
Sbjct: 71 gctctctttgtataatattcg 91
>37531_dya-mir-281-2:mirbase
Length = 92
Score = 79.8 bits (40), Expect = 3e-16
Identities = 70/78 (89%), Gaps = 4/78 (5%)
Strand = Plus / Plus
Query: 15 aagagagctgtccgtcgacagtccagt--ata--aattttaatactgtcatggaattgct 70
||||||||| ||||||||||||| ||| ||| |||| |||||||||||||||||||||
Sbjct: 15 aagagagctatccgtcgacagtcaagttaataccaattgtaatactgtcatggaattgct 74
Query: 71 ctctttgtatgatattcg 88
|||||||||| |||||||
Sbjct: 75 ctctttgtataatattcg 92
>36799_dmo-mir-281-2:mirbase
Length = 93
Score = 77.8 bits (39), Expect = 1e-15
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 46 attttaatactgtcatggaattgctctctttgtatgatattcg 88
||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 51 attttaatactgtcatggaattgctctctttgtataatattcg 93
>37376_dvi-mir-281-2:mirbase
Length = 91
Score = 77.8 bits (39), Expect = 1e-15
Identities = 68/77 (88%), Gaps = 3/77 (3%)
Strand = Plus / Plus
Query: 15 aagagagctgtccgtcgacagtccag---tataaattttaatactgtcatggaattgctc 71
||||||||| ||||||||||||| || || | ||| ||||||||||||||||||||||
Sbjct: 15 aagagagctatccgtcgacagtcaagctatacagattgtaatactgtcatggaattgctc 74
Query: 72 tctttgtatgatattcg 88
||||||||| |||||||
Sbjct: 75 tctttgtataatattcg 91
>37455_dwi-mir-281-2:mirbase
Length = 97
Score = 71.9 bits (36), Expect = 7e-14
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 45 aattttaatactgtcatggaattgctctctttgtatgatattcg 88
|||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 54 aattgtaatactgtcatggaattgctctctttgtataatattcg 97
>36291_dgr-mir-281-2:mirbase
Length = 93
Score = 69.9 bits (35), Expect = 3e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 50 taatactgtcatggaattgctctctttgtatgatattcg 88
||||||||||||||||||||||||||||||| |||||||
Sbjct: 55 taatactgtcatggaattgctctctttgtataatattcg 93
>36202_der-mir-281-2:mirbase
Length = 92
Score = 63.9 bits (32), Expect = 2e-11
Identities = 62/70 (88%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 15 aagagagctgtccgtcgacagtccagt--ataa--attttaatactgtcatggaattgct 70
||||||||| ||||||||||||| ||| ||| ||| |||||||||||||||||||||
Sbjct: 15 aagagagctatccgtcgacagtcaagttaataccgattgtaatactgtcatggaattgct 74
Query: 71 ctctttgtat 80
||||||||||
Sbjct: 75 ctctttgtat 84
>36124_dan-mir-281-2:mirbase
Length = 94
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 50 taatactgtcatggaattgctctctttgtat 80
|||||||||||||||||||||||||||||||
Sbjct: 56 taatactgtcatggaattgctctctttgtat 86
>36426_dme-mir-281-2:mirbase
Length = 92
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 50 taatactgtcatggaattgctctctttgtat 80
|||||||||||||||||||||||||||||||
Sbjct: 54 taatactgtcatggaattgctctctttgtat 84
>36427_dme-mir-281-2:mirbase
Length = 92
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 50 taatactgtcatggaattgctctctttgtat 80
|||||||||||||||||||||||||||||||
Sbjct: 54 taatactgtcatggaattgctctctttgtat 84
>37162_dse-mir-281-2:mirbase
Length = 92
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 50 taatactgtcatggaattgctctctttgtat 80
|||||||||||||||||||||||||||||||
Sbjct: 54 taatactgtcatggaattgctctctttgtat 84
>25355_odi-mir-281:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 aatactgtcatggaattgctctctt 75
|||||||||||||||||||||||||
Sbjct: 61 aatactgtcatggaattgctctctt 85
>38884_lgi-mir-281:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 45 aattttaatactgtcatggaattgctctcttt 76
||||| |||||||||||||| |||||||||||
Sbjct: 50 aatttaaatactgtcatggagttgctctcttt 81
>35210_aae-mir-281:mirbase
Length = 97
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 actgtcatggaattgctctcttt 76
|||||||||||||||||||||||
Sbjct: 56 actgtcatggaattgctctcttt 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 aataaagagagctgtccgtcgacagt 36
||||||||||||| ||||||||||||
Sbjct: 17 aataaagagagctatccgtcgacagt 42
>35305_aga-mir-281:mirbase
Length = 102
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 actgtcatggaattgctctcttt 76
|||||||||||||||||||||||
Sbjct: 55 actgtcatggaattgctctcttt 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 aataaagagagctgtccgtcgacagt 36
||||||||||||| ||||||||||||
Sbjct: 16 aataaagagagctatccgtcgacagt 41
>36038_cqu-mir-281:mirbase
Length = 107
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 actgtcatggaattgctctcttt 76
|||||||||||||||||||||||
Sbjct: 61 actgtcatggaattgctctcttt 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 aataaagagagctgtccgtcgacagt 36
||||||||||||| ||||||||||||
Sbjct: 22 aataaagagagctatccgtcgacagt 47
>38122_bma-mir-281:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 actgtcatggaattgctctcttt 76
|||||||||||||||||||||||
Sbjct: 51 actgtcatggaattgctctcttt 73
>35386_ame-mir-281:mirbase
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 54 actgtcatggaattgctctctttgta 79
||||||||||| ||||||||||||||
Sbjct: 59 actgtcatggagttgctctctttgta 84
>37589_ngi-mir-281:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 actgtcatggaattgctctctttgt 78
||||||||||| |||||||||||||
Sbjct: 45 actgtcatggacttgctctctttgt 69
>37620_nlo-mir-281:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 actgtcatggaattgctctctttgt 78
||||||||||| |||||||||||||
Sbjct: 45 actgtcatggacttgctctctttgt 69
>37663_nvi-mir-281:mirbase
Length = 103
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 actgtcatggaattgctctctttgt 78
||||||||||| |||||||||||||
Sbjct: 59 actgtcatggacttgctctctttgt 83
