miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36800_dmo-mir-282:mirbase
Length = 91
Score = 97.6 bits (49), Expect = 1e-21
Identities = 76/84 (90%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 1 ttccttataaatctagcctctactaggctttgtctgtgcactttttcaattcaatcagac 60
|||||||||||||||||||||||||||||||||||||||| ||| || |||||||
Sbjct: 2 ttccttataaatctagcctctactaggctttgtctgtgca--tttgatataagatcagac 59
Query: 61 atagcctatgagaggttaggtgta 84
||||||||||||||||||||||||
Sbjct: 60 atagcctatgagaggttaggtgta 83
>36877_dpe-mir-282:mirbase
Length = 91
Score = 93.7 bits (47), Expect = 2e-20
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 3 ccttataaatctagcctctactaggctttgtctgtgcactttttcaattcaatcagacat 62
|||||||||||||||||||||||||||||||||||||| ||| || | |||||||||
Sbjct: 3 ccttataaatctagcctctactaggctttgtctgtgca-tttgaaaacccgatcagacat 61
Query: 63 agcctatgagaggttaggtgtac 85
||||||| |||||||||||||||
Sbjct: 62 agcctataagaggttaggtgtac 84
>36957_dps-mir-282:mirbase
Length = 94
Score = 93.7 bits (47), Expect = 2e-20
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 3 ccttataaatctagcctctactaggctttgtctgtgcactttttcaattcaatcagacat 62
|||||||||||||||||||||||||||||||||||||| ||| || | |||||||||
Sbjct: 3 ccttataaatctagcctctactaggctttgtctgtgca-tttgaaaacccgatcagacat 61
Query: 63 agcctatgagaggttaggtgtac 85
||||||| |||||||||||||||
Sbjct: 62 agcctataagaggttaggtgtac 84
>36125_dan-mir-282:mirbase
Length = 90
Score = 91.7 bits (46), Expect = 8e-20
Identities = 76/85 (89%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 1 ttccttataaatctagcctctactaggctttgtctgtgcactttttcaattcaatcagac 60
||||||||| |||||||||||||||||||||||||||||| || || || |||||||
Sbjct: 1 ttccttatagatctagcctctactaggctttgtctgtgca--ttcgaaagtcgatcagac 58
Query: 61 atagcctatgagaggttaggtgtac 85
||||||||| |||||||||||||||
Sbjct: 59 atagcctataagaggttaggtgtac 83
>36203_der-mir-282:mirbase
Length = 97
Score = 91.7 bits (46), Expect = 8e-20
Identities = 76/85 (89%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 1 ttccttataaatctagcctctactaggctttgtctgtgcactttttcaattcaatcagac 60
|||||||||||||||||||||||||||||||||||||||| || || | |||||||
Sbjct: 4 ttccttataaatctagcctctactaggctttgtctgtgca--ttcaaaagccgatcagac 61
Query: 61 atagcctatgagaggttaggtgtac 85
||||||||| |||||||||||||||
Sbjct: 62 atagcctataagaggttaggtgtac 86
>37377_dvi-mir-282:mirbase
Length = 94
Score = 91.7 bits (46), Expect = 8e-20
Identities = 76/85 (89%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 1 ttccttataaatctagcctctactaggctttgtctgtgcactttttcaattcaatcagac 60
|||||||||||||||||||||||||||||||||||||||| || || | ||||||
Sbjct: 4 ttccttataaatctagcctctactaggctttgtctgtgca--ttcgatatacggtcagac 61
Query: 61 atagcctatgagaggttaggtgtac 85
|||||||||||||||||||||||||
Sbjct: 62 atagcctatgagaggttaggtgtac 86
>37456_dwi-mir-282:mirbase
Length = 87
Score = 89.7 bits (45), Expect = 3e-19
Identities = 75/84 (89%), Gaps = 7/84 (8%)
Strand = Plus / Plus
Query: 2 tccttataaatctagcctctactaggctttgtctgtgcactttttcaattcaatcagaca 61
||||||||||||||||||||||||||||||||||||||| ||| || |||||||
Sbjct: 3 tccttataaatctagcctctactaggctttgtctgtgca---tttggat----tcagaca 55
Query: 62 tagcctatgagaggttaggtgtac 85
||||||||||||||||||||||||
Sbjct: 56 tagcctatgagaggttaggtgtac 79
>36428_dme-mir-282:mirbase
Length = 97
Score = 83.8 bits (42), Expect = 2e-17
Identities = 75/85 (88%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 1 ttccttataaatctagcctctactaggctttgtctgtgcactttttcaattcaatcagac 60
|||||| ||||||||||||||||||||||||||||||||| || || | |||||||
Sbjct: 4 ttccttctaaatctagcctctactaggctttgtctgtgca--ttcgaaagccgatcagac 61
Query: 61 atagcctatgagaggttaggtgtac 85
||||||||| |||||||||||||||
Sbjct: 62 atagcctataagaggttaggtgtac 86
>36429_dme-mir-282:mirbase
Length = 97
Score = 83.8 bits (42), Expect = 2e-17
Identities = 75/85 (88%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 1 ttccttataaatctagcctctactaggctttgtctgtgcactttttcaattcaatcagac 60
|||||| ||||||||||||||||||||||||||||||||| || || | |||||||
Sbjct: 4 ttccttctaaatctagcctctactaggctttgtctgtgca--ttcgaaagccgatcagac 61
Query: 61 atagcctatgagaggttaggtgtac 85
||||||||| |||||||||||||||
Sbjct: 62 atagcctataagaggttaggtgtac 86
>37163_dse-mir-282:mirbase
Length = 97
Score = 83.8 bits (42), Expect = 2e-17
Identities = 75/85 (88%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 1 ttccttataaatctagcctctactaggctttgtctgtgcactttttcaattcaatcagac 60
|||||| ||||||||||||||||||||||||||||||||| || || | |||||||
Sbjct: 4 ttccttttaaatctagcctctactaggctttgtctgtgca--ttcgaaagccgatcagac 61
Query: 61 atagcctatgagaggttaggtgtac 85
||||||||| |||||||||||||||
Sbjct: 62 atagcctataagaggttaggtgtac 86
>37239_dsi-mir-282:mirbase
Length = 97
Score = 83.8 bits (42), Expect = 2e-17
Identities = 75/85 (88%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 1 ttccttataaatctagcctctactaggctttgtctgtgcactttttcaattcaatcagac 60
|||||| ||||||||||||||||||||||||||||||||| || || | |||||||
Sbjct: 4 ttccttttaaatctagcctctactaggctttgtctgtgca--ttcgaaagccgatcagac 61
Query: 61 atagcctatgagaggttaggtgtac 85
||||||||| |||||||||||||||
Sbjct: 62 atagcctataagaggttaggtgtac 86
>37532_dya-mir-282:mirbase
Length = 90
Score = 83.8 bits (42), Expect = 2e-17
Identities = 75/85 (88%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 1 ttccttataaatctagcctctactaggctttgtctgtgcactttttcaattcaatcagac 60
|||||||||||||||||||||||||||||||||||||||| | || | |||||||
Sbjct: 1 ttccttataaatctagcctctactaggctttgtctgtgca--tacgaaagccgatcagac 58
Query: 61 atagcctatgagaggttaggtgtac 85
||||||||| |||||||||||||||
Sbjct: 59 atagcctataagaggttaggtgtac 83
>35211_aae-mir-282-1:mirbase
Length = 135
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 aatctagcctctactaggctttgtctgt 37
|||||||||||| |||||||||||||||
Sbjct: 29 aatctagcctctcctaggctttgtctgt 56
>35212_aae-mir-282-2:mirbase
Length = 135
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 aatctagcctctactaggctttgtctgt 37
|||||||||||| |||||||||||||||
Sbjct: 29 aatctagcctctcctaggctttgtctgt 56
>35306_aga-mir-282:mirbase
Length = 93
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 aatctagcctctactaggctttgtctgt 37
|||||||||||| |||||||||||||||
Sbjct: 12 aatctagcctcttctaggctttgtctgt 39
>37783_tca-mir-282:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 tagcctctactaggctttgtctgtg 38
|||||||| ||||||||||||||||
Sbjct: 9 tagcctctcctaggctttgtctgtg 33
>37784_tca-mir-282:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 tagcctctactaggctttgtctgtg 38
|||||||| ||||||||||||||||
Sbjct: 9 tagcctctcctaggctttgtctgtg 33
>35387_ame-mir-282:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 tagcctctactaggctttgtctgt 37
|||||||| |||||||||||||||
Sbjct: 19 tagcctctcctaggctttgtctgt 42
>37621_nlo-mir-282:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 tagcctctactaggctttgtctgt 37
|||||||| |||||||||||||||
Sbjct: 6 tagcctctcctaggctttgtctgt 29
>37664_nvi-mir-282:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 tagcctctactaggctttgtctgt 37
|||||||| |||||||||||||||
Sbjct: 19 tagcctctcctaggctttgtctgt 42
