miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36299_dgr-mir-287-2:mirbase
Length = 73
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 tgcataatgcttgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcataatgcttgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtt 60
Query: 61 tgcacaactgtga 73
|||||||||||||
Sbjct: 61 tgcacaactgtga 73
>37382_dvi-mir-287:mirbase
Length = 68
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 1 tgcataatgcttgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtt 60
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2 tgcataatgtttgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtt 61
Query: 61 tgcacaa 67
|||||||
Sbjct: 62 tgcacaa 68
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 23 acacatttacaatatttgtaaatgtgt 49
||||||||||||| ||||||||||||
Sbjct: 50 acacatttacaattattgtaaatgtgt 24
>36962_dps-mir-287:mirbase
Length = 80
Score = 115 bits (58), Expect = 4e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 12 tgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcacaactgt 71
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 19 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaactgt 78
Query: 72 ga 73
||
Sbjct: 79 ga 80
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 23 acacatttacaatatttgtaaatgtgt 49
||||||||||||| ||||||||||||
Sbjct: 56 acacatttacaattattgtaaatgtgt 30
>36130_dan-mir-287:mirbase
Length = 73
Score = 111 bits (56), Expect = 7e-26
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 12 tgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcacaactgt 71
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 14 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaactgt 73
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 23 acacatttacaatatttgtaaatgtgt 49
||||||||||||| ||||||||||||
Sbjct: 51 acacatttacaattattgtaaatgtgt 25
>36438_dme-mir-287:mirbase
Length = 93
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 12 tgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcacaactgt 71
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 32 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgactgt 91
Query: 72 ga 73
||
Sbjct: 92 ga 93
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 23 acacatttacaatatttgtaaatgtgt 49
||||||||||||| ||||||||||||
Sbjct: 69 acacatttacaattattgtaaatgtgt 43
>36805_dmo-mir-287:mirbase
Length = 62
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 6 aatgcttgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcac 65
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 aatgtttgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 60
Query: 66 aa 67
||
Sbjct: 61 aa 62
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 23 acacatttacaatatttgtaaatgtgt 49
||||||||||||| ||||||||||||
Sbjct: 44 acacatttacaattattgtaaatgtgt 18
>36881_dpe-mir-287:mirbase
Length = 75
Score = 105 bits (53), Expect = 4e-24
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 12 tgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcacaac 68
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 19 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaac 75
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 23 acacatttacaatatttgtaaatgtgt 49
||||||||||||| ||||||||||||
Sbjct: 56 acacatttacaattattgtaaatgtgt 30
>37168_dse-mir-287:mirbase
Length = 71
Score = 105 bits (53), Expect = 4e-24
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 13 gaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcacaactgtg 72
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 11 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgactgtg 70
Query: 73 a 73
|
Sbjct: 71 a 71
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 23 acacatttacaatatttgtaaatgtgt 49
||||||||||||| ||||||||||||
Sbjct: 47 acacatttacaattattgtaaatgtgt 21
>37244_dsi-mir-287:mirbase
Length = 71
Score = 105 bits (53), Expect = 4e-24
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 13 gaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcacaactgtg 72
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 11 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgactgtg 70
Query: 73 a 73
|
Sbjct: 71 a 71
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 23 acacatttacaatatttgtaaatgtgt 49
||||||||||||| ||||||||||||
Sbjct: 47 acacatttacaattattgtaaatgtgt 21
>36208_der-mir-287:mirbase
Length = 90
Score = 101 bits (51), Expect = 6e-23
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 12 tgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcacaactg 70
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 29 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgactg 87
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 23 acacatttacaatatttgtaaatgtgt 49
||||||||||||| ||||||||||||
Sbjct: 66 acacatttacaattattgtaaatgtgt 40
>37461_dwi-mir-287:mirbase
Length = 73
Score = 95.6 bits (48), Expect = 4e-21
Identities = 54/56 (96%)
Strand = Plus / Plus
Query: 12 tgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcacaa 67
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 16 tgaaattttgcacacatttacaattattgtaaatgtgttgaaaatcgtttgcacaa 71
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 23 acacatttacaatatttgtaaatgtgt 49
|||||||||||||| ||||||||||||
Sbjct: 53 acacatttacaataattgtaaatgtgt 27
>37537_dya-mir-287:mirbase
Length = 77
Score = 91.7 bits (46), Expect = 6e-20
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 12 tgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcacaactgt 71
|||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||
Sbjct: 16 tgaaattttgcacacatttacagtaattgtaaatgtgttgaaaatcgtttgcatgactgt 75
Query: 72 ga 73
||
Sbjct: 76 ga 77
