miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36809_dmo-mir-306:mirbase
Length = 71
Score = 58.0 bits (29), Expect = 9e-10
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 3 gctcaggtacttagtgactctcaattcaacattgtattgcacgcctttgagggtcgctct 62
||||||||||||||||||||||||| | |||| ||||| ||||||||||||||||
Sbjct: 1 gctcaggtacttagtgactctcaatcacatattgctttgca-tactttgagggtcgctct 59
Query: 63 gtgcctgtg 71
|||||||||
Sbjct: 60 gtgcctgtg 68
>37386_dvi-mir-306:mirbase
Length = 79
Score = 56.0 bits (28), Expect = 3e-09
Identities = 64/72 (88%), Gaps = 3/72 (4%)
Strand = Plus / Plus
Query: 1 ctgctcaggtacttagtgactctcaattcaac-attgtattgcacgcctttgagggtcgc 59
|||||||||||||||||||||||||| ||| | |||| ||||| || |||||||||||
Sbjct: 4 ctgctcaggtacttagtgactctcaa-tcatctattgctttgcatacc-ttgagggtcgc 61
Query: 60 tctgtgcctgtg 71
||||||||||||
Sbjct: 62 tctgtgcctgtg 73
>36135_dan-mir-306:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 gctcaggtacttagtgactctcaat 27
|||||||||||||||||||||||||
Sbjct: 13 gctcaggtacttagtgactctcaat 37
>36213_der-mir-306:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 gctcaggtacttagtgactctcaat 27
|||||||||||||||||||||||||
Sbjct: 13 gctcaggtacttagtgactctcaat 37
>36447_dme-mir-306:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 gctcaggtacttagtgactctcaat 27
|||||||||||||||||||||||||
Sbjct: 13 gctcaggtacttagtgactctcaat 37
>36448_dme-mir-306:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 gctcaggtacttagtgactctcaat 27
|||||||||||||||||||||||||
Sbjct: 13 gctcaggtacttagtgactctcaat 37
>36885_dpe-mir-306:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 gctcaggtacttagtgactctcaat 27
|||||||||||||||||||||||||
Sbjct: 11 gctcaggtacttagtgactctcaat 35
>36967_dps-mir-306:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 gctcaggtacttagtgactctcaat 27
|||||||||||||||||||||||||
Sbjct: 11 gctcaggtacttagtgactctcaat 35
>37173_dse-mir-306:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 gctcaggtacttagtgactctcaat 27
|||||||||||||||||||||||||
Sbjct: 12 gctcaggtacttagtgactctcaat 36
>37542_dya-mir-306:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 gctcaggtacttagtgactctcaat 27
|||||||||||||||||||||||||
Sbjct: 13 gctcaggtacttagtgactctcaat 37
>37465_dwi-mir-306-1:mirbase
Length = 64
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 gctcaggtacttagtgactctcaa 26
||||||||||||||||||||||||
Sbjct: 1 gctcaggtacttagtgactctcaa 24
>37466_dwi-mir-306-2:mirbase
Length = 64
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 gctcaggtacttagtgactctcaa 26
||||||||||||||||||||||||
Sbjct: 1 gctcaggtacttagtgactctcaa 24
>36042_cqu-mir-306:mirbase
Length = 72
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 3 gctcaggtacttagtgactctca 25
||||||||||| |||||||||||
Sbjct: 4 gctcaggtactgagtgactctca 26
