miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37473_dwi-mir-317:mirbase
Length = 85
Score = 115 bits (58), Expect = 5e-27
Identities = 80/86 (93%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 2 gcaattgccactgggatattgccctgtgctcgctttgaatattgtgtaagcaagtgaaca 61
|||| ||||||||||||| ||||||||||||||||||||||||| || ||||||||||
Sbjct: 1 gcaactgccactgggataca-ccctgtgctcgctttgaatattgtgcaaacaagtgaaca 59
Query: 62 cagctggtggtatccagtggccgttt 87
||||||||||||||||||||||||||
Sbjct: 60 cagctggtggtatccagtggccgttt 85
>36892_dpe-mir-317-1:mirbase
Length = 90
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 23 ccctgtgctcgctttgaatattgtgtaagcaagtgaacacagctggtggtatccagtggc 82
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||
Sbjct: 22 ccctgtgctcgctttgaatatggtgcaagcaagtgaacacagctggtggtatccaatggc 81
Query: 83 cgtt 86
||||
Sbjct: 82 cgtt 85
>36893_dpe-mir-317-2:mirbase
Length = 90
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 23 ccctgtgctcgctttgaatattgtgtaagcaagtgaacacagctggtggtatccagtggc 82
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||
Sbjct: 22 ccctgtgctcgctttgaatatggtgcaagcaagtgaacacagctggtggtatccaatggc 81
Query: 83 cgtt 86
||||
Sbjct: 82 cgtt 85
>36976_dps-mir-317:mirbase
Length = 90
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 23 ccctgtgctcgctttgaatattgtgtaagcaagtgaacacagctggtggtatccagtggc 82
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||
Sbjct: 22 ccctgtgctcgctttgaatatggtgcaagcaagtgaacacagctggtggtatccaatggc 81
Query: 83 cgtt 86
||||
Sbjct: 82 cgtt 85
>37396_dvi-mir-317:mirbase
Length = 86
Score = 101 bits (51), Expect = 8e-23
Identities = 79/86 (91%), Gaps = 3/86 (3%)
Strand = Plus / Plus
Query: 1 tgcaattgccactgggatattgccctgtgctcgctttgaatattgtgtaagcaagtgaac 60
|||||||||| |||||||| ||||||||||||||||||| |||| ||||||||||||
Sbjct: 1 tgcaattgccgctgggataca-ccctgtgctcgctttgaat--tgtgcaagcaagtgaac 57
Query: 61 acagctggtggtatccagtggccgtt 86
||||||||||||||||||||||||||
Sbjct: 58 acagctggtggtatccagtggccgtt 83
>36228_der-mir-317:mirbase
Length = 92
Score = 95.6 bits (48), Expect = 5e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 23 ccctgtgctcgctttgaatattgtgtaagcaagtgaacacagctggtggtatccagtggc 82
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 23 ccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggtatccagtggc 82
Query: 83 cgtttggc 90
||||||||
Sbjct: 83 cgtttggc 90
>36471_dme-mir-317:mirbase
Length = 92
Score = 95.6 bits (48), Expect = 5e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 23 ccctgtgctcgctttgaatattgtgtaagcaagtgaacacagctggtggtatccagtggc 82
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 23 ccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggtatccagtggc 82
Query: 83 cgtttggc 90
||||||||
Sbjct: 83 cgtttggc 90
>36472_dme-mir-317:mirbase
Length = 92
Score = 95.6 bits (48), Expect = 5e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 23 ccctgtgctcgctttgaatattgtgtaagcaagtgaacacagctggtggtatccagtggc 82
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 23 ccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggtatccagtggc 82
Query: 83 cgtttggc 90
||||||||
Sbjct: 83 cgtttggc 90
>37184_dse-mir-317:mirbase
Length = 92
Score = 95.6 bits (48), Expect = 5e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 23 ccctgtgctcgctttgaatattgtgtaagcaagtgaacacagctggtggtatccagtggc 82
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 23 ccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggtatccagtggc 82
Query: 83 cgtttggc 90
||||||||
Sbjct: 83 cgtttggc 90
>37260_dsi-mir-317:mirbase
Length = 92
Score = 95.6 bits (48), Expect = 5e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 23 ccctgtgctcgctttgaatattgtgtaagcaagtgaacacagctggtggtatccagtggc 82
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 23 ccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggtatccagtggc 82
Query: 83 cgtttggc 90
||||||||
Sbjct: 83 cgtttggc 90
>37555_dya-mir-317:mirbase
Length = 92
Score = 95.6 bits (48), Expect = 5e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 23 ccctgtgctcgctttgaatattgtgtaagcaagtgaacacagctggtggtatccagtggc 82
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 23 ccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggtatccagtggc 82
Query: 83 cgtttggc 90
||||||||
Sbjct: 83 cgtttggc 90
>36146_dan-mir-317:mirbase
Length = 91
Score = 89.7 bits (45), Expect = 3e-19
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 23 ccctgtgctcgctttgaatattgtgtaagcaagtgaacacagctggtggtatccagtggc 82
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 22 ccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggtatccagtggc 81
Query: 83 cgttt 87
|||||
Sbjct: 82 cgttt 86
>36817_dmo-mir-317:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 1e-12
Identities = 76/86 (88%), Gaps = 3/86 (3%)
Strand = Plus / Plus
Query: 1 tgcaattgccactgggatattgccctgtgctcgctttgaatattgtgtaagcaagtgaac 60
|||||||||| |||||||| ||||||||||||||||| | || ||| ||||||||||
Sbjct: 1 tgcaattgccgctgggataca-ccctgtgctcgctttgagt-ttatgtt-gcaagtgaac 57
Query: 61 acagctggtggtatccagtggccgtt 86
|||||||||||||||||| |||||||
Sbjct: 58 acagctggtggtatccagaggccgtt 83
>35227_aae-mir-317-1:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 30/31 (96%), Gaps = 1/31 (3%)
Strand = Plus / Plus
Query: 54 agtgaacacagctggtggtatc-cagtggcc 83
|||||||||||||||||||||| ||||||||
Sbjct: 53 agtgaacacagctggtggtatctcagtggcc 83
>35228_aae-mir-317-2:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 4e-06
Identities = 30/31 (96%), Gaps = 1/31 (3%)
Strand = Plus / Plus
Query: 54 agtgaacacagctggtggtatc-cagtggcc 83
|||||||||||||||||||||| ||||||||
Sbjct: 51 agtgaacacagctggtggtatctcagtggcc 81
>36047_cqu-mir-317:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 30/31 (96%), Gaps = 1/31 (3%)
Strand = Plus / Plus
Query: 54 agtgaacacagctggtggtatc-cagtggcc 83
|||||||||||||||||||||| ||||||||
Sbjct: 53 agtgaacacagctggtggtatctcagtggcc 83
>35087_api-mir-317:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 agtgaacacagctggtggtatc 75
||||||||||||||||||||||
Sbjct: 55 agtgaacacagctggtggtatc 76
>35567_bmo-mir-317:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 agtgaacacagctggtggtatc 75
||||||||||||||||||||||
Sbjct: 53 agtgaacacagctggtggtatc 74
>37801_tca-mir-317:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 agtgaacacagctggtggtatc 75
||||||||||||||||||||||
Sbjct: 44 agtgaacacagctggtggtatc 65
>37802_tca-mir-317:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 agtgaacacagctggtggtatc 75
||||||||||||||||||||||
Sbjct: 44 agtgaacacagctggtggtatc 65
>38886_lgi-mir-317:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 gtgaacacagctggtggtatc 75
|||||||||||||||||||||
Sbjct: 60 gtgaacacagctggtggtatc 80
>38776_cte-mir-317:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 gtgaacacagctggtggtatc 75
|||||||||||||||||||||
Sbjct: 60 gtgaacacagctggtggtatc 80
>35032_dpu-mir-317:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 gtgaacacagctggtggtatc 75
|||||||||||||||||||||
Sbjct: 60 gtgaacacagctggtggtatc 80
>35394_ame-mir-317:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 gtgaacacagctggtggtatc 75
|||||||||||||||||||||
Sbjct: 54 gtgaacacagctggtggtatc 74
>37592_ngi-mir-317:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 gtgaacacagctggtggtatc 75
|||||||||||||||||||||
Sbjct: 51 gtgaacacagctggtggtatc 71
>37669_nvi-mir-317:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 gtgaacacagctggtggtatc 75
|||||||||||||||||||||
Sbjct: 54 gtgaacacagctggtggtatc 74
>34987_isc-mir-317:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 gtgaacacagctggtggtat 74
||||||||||||||||||||
Sbjct: 60 gtgaacacagctggtggtat 79
>35315_aga-mir-317:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 3e-04
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 54 agtgaacacagctggtggtatc-cagtggccg 84
|||||||||| ||||||||||| |||||||||
Sbjct: 54 agtgaacacatctggtggtatctcagtggccg 85
