miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36333_dme-mir-4:mirbase
          Length = 81

 Score =  161 bits (81), Expect = 9e-41
 Identities = 81/81 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttgcaattagtttctttggtcgtccagccttaggtgatttttccggtcataaagctagac 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ttgcaattagtttctttggtcgtccagccttaggtgatttttccggtcataaagctagac 60

                               
Query: 61 aaccattgaagttcgttgtgg 81
          |||||||||||||||||||||
Sbjct: 61 aaccattgaagttcgttgtgg 81




>37119_dse-mir-4:mirbase
          Length = 81

 Score =  145 bits (73), Expect = 5e-36
 Identities = 79/81 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttgcaattagtttctttggtcgtccagccttaggtgatttttccggtcataaagctagac 60
          ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 1  ttgcaattagtttctttggtcgtccagccttaggtgacttttccgatcataaagctagac 60

                               
Query: 61 aaccattgaagttcgttgtgg 81
          |||||||||||||||||||||
Sbjct: 61 aaccattgaagttcgttgtgg 81




>37197_dsi-mir-4:mirbase
          Length = 81

 Score =  145 bits (73), Expect = 5e-36
 Identities = 79/81 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttgcaattagtttctttggtcgtccagccttaggtgatttttccggtcataaagctagac 60
          ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 1  ttgcaattagtttctttggtcgtccagccttaggtgacttttccgatcataaagctagac 60

                               
Query: 61 aaccattgaagttcgttgtgg 81
          |||||||||||||||||||||
Sbjct: 61 aaccattgaagttcgttgtgg 81




>36159_der-mir-4:mirbase
          Length = 81

 Score =  137 bits (69), Expect = 1e-33
 Identities = 78/81 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttgcaattagtttctttggtcgtccagccttaggtgatttttccggtcataaagctagac 60
          ||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||
Sbjct: 1  ttgcaattagtttctttggtcgtccagccttaggtgacttttctgatcataaagctagac 60

                               
Query: 61 aaccattgaagttcgttgtgg 81
          |||||||||||||||||||||
Sbjct: 61 aaccattgaagttcgttgtgg 81




>36242_dgr-mir-4-1:mirbase
          Length = 81

 Score =  137 bits (69), Expect = 1e-33
 Identities = 78/81 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttgcaattagtttctttggtcgtccagccttaggtgatttttccggtcataaagctagac 60
          |||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct: 1  ttgcaattagtttctttggtcgtccagccttaggtgatttctctgatcataaagctagac 60

                               
Query: 61 aaccattgaagttcgttgtgg 81
          |||||||||||||||||||||
Sbjct: 61 aaccattgaagttcgttgtgg 81




>36243_dgr-mir-4-2:mirbase
          Length = 81

 Score =  137 bits (69), Expect = 1e-33
 Identities = 78/81 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttgcaattagtttctttggtcgtccagccttaggtgatttttccggtcataaagctagac 60
          |||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct: 1  ttgcaattagtttctttggtcgtccagccttaggtgatttctctgatcataaagctagac 60

                               
Query: 61 aaccattgaagttcgttgtgg 81
          |||||||||||||||||||||
Sbjct: 61 aaccattgaagttcgttgtgg 81




>36757_dmo-mir-4:mirbase
          Length = 81

 Score =  137 bits (69), Expect = 1e-33
 Identities = 78/81 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttgcaattagtttctttggtcgtccagccttaggtgatttttccggtcataaagctagac 60
          |||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct: 1  ttgcaattagtttctttggtcgtccagccttaggtgatttctctgatcataaagctagac 60

                               
Query: 61 aaccattgaagttcgttgtgg 81
          |||||||||||||||||||||
Sbjct: 61 aaccattgaagttcgttgtgg 81




>36830_dpe-mir-4:mirbase
          Length = 81

 Score =  137 bits (69), Expect = 1e-33
 Identities = 78/81 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttgcaattagtttctttggtcgtccagccttaggtgatttttccggtcataaagctagac 60
          |||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct: 1  ttgcaattagtttctttggtcgtccagccttaggtgatttctctgatcataaagctagac 60

                               
Query: 61 aaccattgaagttcgttgtgg 81
          |||||||||||||||||||||
Sbjct: 61 aaccattgaagttcgttgtgg 81




>36906_dps-mir-4:mirbase
          Length = 81

 Score =  137 bits (69), Expect = 1e-33
 Identities = 78/81 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttgcaattagtttctttggtcgtccagccttaggtgatttttccggtcataaagctagac 60
          |||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct: 1  ttgcaattagtttctttggtcgtccagccttaggtgatttctctgatcataaagctagac 60

                               
Query: 61 aaccattgaagttcgttgtgg 81
          |||||||||||||||||||||
Sbjct: 61 aaccattgaagttcgttgtgg 81




>37333_dvi-mir-4:mirbase
          Length = 81

 Score =  137 bits (69), Expect = 1e-33
 Identities = 78/81 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttgcaattagtttctttggtcgtccagccttaggtgatttttccggtcataaagctagac 60
          |||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct: 1  ttgcaattagtttctttggtcgtccagccttaggtgatttctctgatcataaagctagac 60

                               
Query: 61 aaccattgaagttcgttgtgg 81
          |||||||||||||||||||||
Sbjct: 61 aaccattgaagttcgttgtgg 81




>37408_dwi-mir-4:mirbase
          Length = 81

 Score =  137 bits (69), Expect = 1e-33
 Identities = 78/81 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttgcaattagtttctttggtcgtccagccttaggtgatttttccggtcataaagctagac 60
          |||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct: 1  ttgcaattagtttctttggtcgtccagccttaggtgatttctctgatcataaagctagac 60

                               
Query: 61 aaccattgaagttcgttgtgg 81
          |||||||||||||||||||||
Sbjct: 61 aaccattgaagttcgttgtgg 81




>37487_dya-mir-4:mirbase
          Length = 81

 Score =  137 bits (69), Expect = 1e-33
 Identities = 78/81 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttgcaattagtttctttggtcgtccagccttaggtgatttttccggtcataaagctagac 60
          ||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||
Sbjct: 1  ttgcaattagtttctttggtcgtccagccttaggtgacttttctgatcataaagctagac 60

                               
Query: 61 aaccattgaagttcgttgtgg 81
          |||||||||||||||||||||
Sbjct: 61 aaccattgaagttcgttgtgg 81




>36081_dan-mir-4:mirbase
          Length = 81

 Score =  129 bits (65), Expect = 3e-31
 Identities = 77/81 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttgcaattagtttctttggtcgtccagccttaggtgatttttccggtcataaagctagac 60
          ||||||||||||||||||||||||||||||||||||| || || | ||||||||||||||
Sbjct: 1  ttgcaattagtttctttggtcgtccagccttaggtgacttctctgatcataaagctagac 60

                               
Query: 61 aaccattgaagttcgttgtgg 81
          |||||||||||||||||||||
Sbjct: 61 aaccattgaagttcgttgtgg 81




>25693_xtr-mir-9b:mirbase
          Length = 74

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 46 gtcataaagctagacaacc 64
          |||||||||||||||||||
Sbjct: 42 gtcataaagctagacaacc 60