miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36336_dme-mir-5:mirbase
          Length = 69

 Score =  137 bits (69), Expect = 1e-33
 Identities = 69/69 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gctaaaaggaacgatcgttgtgatatgagttgtttcctaacatatcacagtgattttcct 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gctaaaaggaacgatcgttgtgatatgagttgtttcctaacatatcacagtgattttcct 60

                   
Query: 61 ttataacgc 69
          |||||||||
Sbjct: 61 ttataacgc 69




>36160_der-mir-5:mirbase
          Length = 64

 Score =  111 bits (56), Expect = 6e-26
 Identities = 62/64 (96%)
 Strand = Plus / Plus

                                                                      
Query: 3  taaaaggaacgatcgttgtgatatgagttgtttcctaacatatcacagtgattttccttt 62
          ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 1  taaaaggaacgatcgttgtgatatgcgttgttccctaacatatcacagtgattttccttt 60

              
Query: 63 ataa 66
          ||||
Sbjct: 61 ataa 64




>37120_dse-mir-5:mirbase
          Length = 64

 Score =  111 bits (56), Expect = 6e-26
 Identities = 62/64 (96%)
 Strand = Plus / Plus

                                                                      
Query: 3  taaaaggaacgatcgttgtgatatgagttgtttcctaacatatcacagtgattttccttt 62
          |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 1  taaaaggaacgatcgttgtgatatgagttgttcccgaacatatcacagtgattttccttt 60

              
Query: 63 ataa 66
          ||||
Sbjct: 61 ataa 64




>37488_dya-mir-5:mirbase
          Length = 64

 Score =  103 bits (52), Expect = 2e-23
 Identities = 61/64 (95%)
 Strand = Plus / Plus

                                                                      
Query: 3  taaaaggaacgatcgttgtgatatgagttgtttcctaacatatcacagtgattttccttt 62
          ||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||
Sbjct: 1  taaaaggaacgatcgttgtgatatgcgttattccctaacatatcacagtgattttccttt 60

              
Query: 63 ataa 66
          ||||
Sbjct: 61 ataa 64




>37198_dsi-mir-5:mirbase
          Length = 63

 Score =  101 bits (51), Expect = 6e-23
 Identities = 61/63 (96%), Gaps = 1/63 (1%)
 Strand = Plus / Plus

                                                                      
Query: 3  taaaaggaacgatcgttgtgatatgagttgtttcctaacatatcacagtgattttccttt 62
          |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 1  taaaaggaacgatcgttgtgatatgagttg-ttcccaacatatcacagtgattttccttt 59

             
Query: 63 ata 65
          |||
Sbjct: 60 ata 62




>36831_dpe-mir-5:mirbase
          Length = 72

 Score = 67.9 bits (34), Expect = 8e-13
 Identities = 60/68 (88%), Gaps = 3/68 (4%)
 Strand = Plus / Plus

                                                                      
Query: 1  gctaaaaggaacgatcgttgtgatatgagttgttt---cctaacatatcacagtgatttt 57
          ||||||||||||||||||||||||||| |||  ||   | | ||||||||||||||||||
Sbjct: 1  gctaaaaggaacgatcgttgtgatatgcgttaattcaccgttacatatcacagtgatttt 60

                  
Query: 58 cctttata 65
          ||||||||
Sbjct: 61 cctttata 68




>36907_dps-mir-5:mirbase
          Length = 72

 Score = 67.9 bits (34), Expect = 8e-13
 Identities = 60/68 (88%), Gaps = 3/68 (4%)
 Strand = Plus / Plus

                                                                      
Query: 1  gctaaaaggaacgatcgttgtgatatgagttgttt---cctaacatatcacagtgatttt 57
          ||||||||||||||||||||||||||| |||  ||   | | ||||||||||||||||||
Sbjct: 1  gctaaaaggaacgatcgttgtgatatgcgttaattcaccgttacatatcacagtgatttt 60

                  
Query: 58 cctttata 65
          ||||||||
Sbjct: 61 cctttata 68




>36082_dan-mir-5:mirbase
          Length = 67

 Score = 65.9 bits (33), Expect = 3e-12
 Identities = 59/67 (88%), Gaps = 3/67 (4%)
 Strand = Plus / Plus

                                                                      
Query: 3  taaaaggaacgatcgttgtgatatgagttgtttccta---acatatcacagtgattttcc 59
          ||||||||||||||||||||||||| |||  | |||    ||||||||||||||||||||
Sbjct: 1  taaaaggaacgatcgttgtgatatgcgtttatccctcgttacatatcacagtgattttcc 60

                 
Query: 60 tttataa 66
          |||||||
Sbjct: 61 tttataa 67




>37334_dvi-mir-5:mirbase
          Length = 70

 Score = 65.9 bits (33), Expect = 3e-12
 Identities = 59/67 (88%), Gaps = 3/67 (4%)
 Strand = Plus / Plus

                                                                      
Query: 2  ctaaaaggaacgatcgttgtgatatgagttgttt---cctaacatatcacagtgattttc 58
          |||||||||||||||||||||||||| |||  ||   | | |||||||||||||||||||
Sbjct: 1  ctaaaaggaacgatcgttgtgatatgcgttcattaaccgttacatatcacagtgattttc 60

                 
Query: 59 ctttata 65
          |||||||
Sbjct: 61 ctttata 67




>36244_dgr-mir-5-1:mirbase
          Length = 73

 Score = 63.9 bits (32), Expect = 1e-11
 Identities = 60/69 (86%), Gaps = 4/69 (5%)
 Strand = Plus / Plus

                                                                      
Query: 1  gctaaaaggaacgatcgttgtgatatgagttgtt----tcctaacatatcacagtgattt 56
          ||||||||||||||||||||||||||| |||  |    || | |||||||||||||||||
Sbjct: 1  gctaaaaggaacgatcgttgtgatatgcgttcattaaatcgttacatatcacagtgattt 60

                   
Query: 57 tcctttata 65
          |||||||||
Sbjct: 61 tcctttata 69




>36245_dgr-mir-5-2:mirbase
          Length = 73

 Score = 63.9 bits (32), Expect = 1e-11
 Identities = 60/69 (86%), Gaps = 4/69 (5%)
 Strand = Plus / Plus

                                                                      
Query: 1  gctaaaaggaacgatcgttgtgatatgagttgtt----tcctaacatatcacagtgattt 56
          ||||||||||||||||||||||||||| |||  |    || | |||||||||||||||||
Sbjct: 1  gctaaaaggaacgatcgttgtgatatgcgttcattaaatcgttacatatcacagtgattt 60

                   
Query: 57 tcctttata 65
          |||||||||
Sbjct: 61 tcctttata 69




>36758_dmo-mir-5:mirbase
          Length = 72

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 59/68 (86%), Gaps = 3/68 (4%)
 Strand = Plus / Plus

                                                                      
Query: 1  gctaaaaggaacgatcgttgtgatatgagttgtt---tcctaacatatcacagtgatttt 57
          ||||||||||||||||||||||||||| |||  |    | | ||||||||||||||||||
Sbjct: 1  gctaaaaggaacgatcgttgtgatatgcgttaatcgaccgttacatatcacagtgatttt 60

                  
Query: 58 cctttata 65
          ||||||||
Sbjct: 61 cctttata 68




>37409_dwi-mir-5:mirbase
          Length = 73

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  gctaaaaggaacgatcgttgtgatatg 27
          |||||||||||||||||||||||||||
Sbjct: 1  gctaaaaggaacgatcgttgtgatatg 27