miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36339_dme-mir-6-2:mirbase
          Length = 74

 Score =  147 bits (74), Expect = 1e-36
 Identities = 74/74 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  taacccaagggaacttctgctgctgatatattattgaaaaactactatatcacagtggct 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  taacccaagggaacttctgctgctgatatattattgaaaaactactatatcacagtggct 60

                        
Query: 61 gttctttttggttg 74
          ||||||||||||||
Sbjct: 61 gttctttttggttg 74




>37122_dse-mir-6-2:mirbase
          Length = 74

 Score =  131 bits (66), Expect = 7e-32
 Identities = 72/74 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  taacccaagggaacttctgctgctgatatattattgaaaaactactatatcacagtggct 60
          |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1  taaccccagggaacttctgctgctgatatattattgaaaaactcctatatcacagtggct 60

                        
Query: 61 gttctttttggttg 74
          ||||||||||||||
Sbjct: 61 gttctttttggttg 74




>37200_dsi-mir-6-2:mirbase
          Length = 74

 Score =  131 bits (66), Expect = 7e-32
 Identities = 72/74 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  taacccaagggaacttctgctgctgatatattattgaaaaactactatatcacagtggct 60
          |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1  taaccccagggaacttctgctgctgatatattattgaaaaactcctatatcacagtggct 60

                        
Query: 61 gttctttttggttg 74
          ||||||||||||||
Sbjct: 61 gttctttttggttg 74




>37490_dya-mir-6-2:mirbase
          Length = 74

 Score =  109 bits (55), Expect = 3e-25
 Identities = 64/67 (95%)
 Strand = Plus / Plus

                                                                      
Query: 8  agggaacttctgctgctgatatattattgaaaaactactatatcacagtggctgttcttt 67
          ||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 8  agggaacctctgctgctgatatattattgagaaacttctatatcacagtggctgttcttt 67

                 
Query: 68 ttggttg 74
          |||||||
Sbjct: 68 ttggttg 74




>36162_der-mir-6-2:mirbase
          Length = 73

 Score =  107 bits (54), Expect = 1e-24
 Identities = 70/74 (94%), Gaps = 1/74 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  taacccaagggaacttctgctgctgatatattattgaaaaactactatatcacagtggct 60
          |||||| ||||||| ||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 1  taaccccagggaacctctgctgctgatatattattgaaaa-ctcctatatcacagtggct 59

                        
Query: 61 gttctttttggttg 74
          ||||||||||||||
Sbjct: 60 gttctttttggttg 73




>36247_dgr-mir-6-2:mirbase
          Length = 79

 Score = 61.9 bits (31), Expect = 6e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 44 actatatcacagtggctgttctttttggttg 74
          |||||||||||||||||||||||||||||||
Sbjct: 49 actatatcacagtggctgttctttttggttg 79




>36250_dgr-mir-6-5:mirbase
          Length = 79

 Score = 61.9 bits (31), Expect = 6e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 44 actatatcacagtggctgttctttttggttg 74
          |||||||||||||||||||||||||||||||
Sbjct: 49 actatatcacagtggctgttctttttggttg 79




>36760_dmo-mir-6-2:mirbase
          Length = 81

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 45 ctatatcacagtggctgttctttttggttg 74
          ||||||||||||||||||||||||||||||
Sbjct: 52 ctatatcacagtggctgttctttttggttg 81



 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 8  agggaacttctgctgctgatata 30
          |||||||| ||||||||||||||
Sbjct: 8  agggaactgctgctgctgatata 30




>36834_dpe-mir-6-3:mirbase
          Length = 83

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 45 ctatatcacagtggctgttctttttggtt 73
          |||||||||||||||||||||||||||||
Sbjct: 55 ctatatcacagtggctgttctttttggtt 83



 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                     
Query: 8  agggaacttctgctgctgatatattat 34
          |||||||  ||||||||||||||||||
Sbjct: 9  agggaaccgctgctgctgatatattat 35




>36909_dps-mir-6-2:mirbase
          Length = 83

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 45 ctatatcacagtggctgttctttttggtt 73
          |||||||||||||||||||||||||||||
Sbjct: 55 ctatatcacagtggctgttctttttggtt 83



 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                     
Query: 8  agggaacttctgctgctgatatattat 34
          |||||||  ||||||||||||||||||
Sbjct: 9  agggaaccgctgctgctgatatattat 35




>37411_dwi-mir-6-2:mirbase
          Length = 94

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 45 ctatatcacagtggctgttctttttggtt 73
          |||||||||||||||||||||||||||||
Sbjct: 66 ctatatcacagtggctgttctttttggtt 94




>37336_dvi-mir-6-2:mirbase
          Length = 80

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 47 atatcacagtggctgttctttttggttg 74
          ||||||||||||||||||||||||||||
Sbjct: 53 atatcacagtggctgttctttttggttg 80



 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 8  agggaacttctgctgctgatata 30
          |||||||| ||||||||||||||
Sbjct: 8  agggaactgctgctgctgatata 30




>36084_dan-mir-6-2:mirbase
          Length = 84

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 45 ctatatcacagtggctgttctttttgg 71
          |||||||||||||||||||||||||||
Sbjct: 55 ctatatcacagtggctgttctttttgg 81



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 8  agggaacttctgctgctgatatattatt 35
          ||||||||  ||||||||||||||||||
Sbjct: 8  agggaactgttgctgctgatatattatt 35




>36083_dan-mir-6-1:mirbase
          Length = 68

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 45 ctatatcacagtggctgttctttttg 70
          ||||||||||||||||||||||||||
Sbjct: 40 ctatatcacagtggctgttctttttg 65




>36161_der-mir-6-1:mirbase
          Length = 71

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 45 ctatatcacagtggctgttctttttg 70
          ||||||||||||||||||||||||||
Sbjct: 44 ctatatcacagtggctgttctttttg 69




>36246_dgr-mir-6-1:mirbase
          Length = 70

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 45 ctatatcacagtggctgttctttttg 70
          ||||||||||||||||||||||||||
Sbjct: 43 ctatatcacagtggctgttctttttg 68




>36249_dgr-mir-6-4:mirbase
          Length = 70

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 45 ctatatcacagtggctgttctttttg 70
          ||||||||||||||||||||||||||
Sbjct: 43 ctatatcacagtggctgttctttttg 68




>36337_dme-mir-6-1:mirbase
          Length = 82

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 45 ctatatcacagtggctgttctttttg 70
          ||||||||||||||||||||||||||
Sbjct: 49 ctatatcacagtggctgttctttttg 74




>36338_dme-mir-6-1:mirbase
          Length = 82

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 45 ctatatcacagtggctgttctttttg 70
          ||||||||||||||||||||||||||
Sbjct: 49 ctatatcacagtggctgttctttttg 74




>37121_dse-mir-6-1:mirbase
          Length = 71

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 45 ctatatcacagtggctgttctttttg 70
          ||||||||||||||||||||||||||
Sbjct: 44 ctatatcacagtggctgttctttttg 69




>37199_dsi-mir-6-1:mirbase
          Length = 71

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 45 ctatatcacagtggctgttctttttg 70
          ||||||||||||||||||||||||||
Sbjct: 44 ctatatcacagtggctgttctttttg 69




>37335_dvi-mir-6-1:mirbase
          Length = 70

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 45 ctatatcacagtggctgttctttttg 70
          ||||||||||||||||||||||||||
Sbjct: 43 ctatatcacagtggctgttctttttg 68




>37489_dya-mir-6-1:mirbase
          Length = 71

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 45 ctatatcacagtggctgttctttttg 70
          ||||||||||||||||||||||||||
Sbjct: 44 ctatatcacagtggctgttctttttg 69




>36759_dmo-mir-6-1:mirbase
          Length = 66

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 46 tatatcacagtggctgttctttttg 70
          |||||||||||||||||||||||||
Sbjct: 40 tatatcacagtggctgttctttttg 64




>36832_dpe-mir-6-1:mirbase
          Length = 69

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 46 tatatcacagtggctgttctttttg 70
          |||||||||||||||||||||||||
Sbjct: 43 tatatcacagtggctgttctttttg 67




>36908_dps-mir-6-1:mirbase
          Length = 80

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 46 tatatcacagtggctgttctttttg 70
          |||||||||||||||||||||||||
Sbjct: 48 tatatcacagtggctgttctttttg 72




>36085_dan-mir-6-3:mirbase
          Length = 76

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 46 tatatcacagtggctgttcttttt 69
          ||||||||||||||||||||||||
Sbjct: 47 tatatcacagtggctgttcttttt 70




>36163_der-mir-6-3:mirbase
          Length = 80

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 46 tatatcacagtggctgttcttttt 69
          ||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74




>36248_dgr-mir-6-3:mirbase
          Length = 74

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 46 tatatcacagtggctgttcttttt 69
          ||||||||||||||||||||||||
Sbjct: 48 tatatcacagtggctgttcttttt 71




>36251_dgr-mir-6-6:mirbase
          Length = 74

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 46 tatatcacagtggctgttcttttt 69
          ||||||||||||||||||||||||
Sbjct: 48 tatatcacagtggctgttcttttt 71




>36341_dme-mir-6-3:mirbase
          Length = 80

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 46 tatatcacagtggctgttcttttt 69
          ||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74




>36342_dme-mir-6-3:mirbase
          Length = 80

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 46 tatatcacagtggctgttcttttt 69
          ||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74




>36761_dmo-mir-6-3:mirbase
          Length = 78

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 46 tatatcacagtggctgttcttttt 69
          ||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttcttttt 73




>36833_dpe-mir-6-2:mirbase
          Length = 80

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 46 tatatcacagtggctgttcttttt 69
          ||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74




>36910_dps-mir-6-3:mirbase
          Length = 80

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 46 tatatcacagtggctgttcttttt 69
          ||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74




>37123_dse-mir-6-3:mirbase
          Length = 80

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 46 tatatcacagtggctgttcttttt 69
          ||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74




>37201_dsi-mir-6-3:mirbase
          Length = 80

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 46 tatatcacagtggctgttcttttt 69
          ||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74




>37337_dvi-mir-6-3:mirbase
          Length = 73

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 46 tatatcacagtggctgttcttttt 69
          ||||||||||||||||||||||||
Sbjct: 47 tatatcacagtggctgttcttttt 70




>37410_dwi-mir-6-1:mirbase
          Length = 69

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 atatcacagtggctgttctttttg 70
          ||||||||||||||||||||||||
Sbjct: 44 atatcacagtggctgttctttttg 67




>37412_dwi-mir-6-3:mirbase
          Length = 76

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 46 tatatcacagtggctgttcttttt 69
          ||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttcttttt 73




>37491_dya-mir-6-3:mirbase
          Length = 80

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 46 tatatcacagtggctgttcttttt 69
          ||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74