miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36350_dme-mir-9b:mirbase
          Length = 91

 Score =  180 bits (91), Expect = 1e-46
 Identities = 91/91 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60

                                         
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
          |||||||||||||||||||||||||||||||
Sbjct: 61 ctttattaccaaaaaccaaatggtttctgca 91




>37496_dya-mir-9b:mirbase
          Length = 91

 Score =  141 bits (71), Expect = 1e-34
 Identities = 86/91 (94%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
          ||||||||||||||||||||||||||||||||||||||||| | | | | ||||||||||
Sbjct: 1  tgcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagag 60

                                         
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
          |||||||||||||||||||||||||||||||
Sbjct: 61 ctttattaccaaaaaccaaatggtttctgca 91




>36167_der-mir-9b:mirbase
          Length = 89

 Score =  135 bits (68), Expect = 6e-33
 Identities = 86/91 (94%), Gaps = 2/91 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
          ||||||||||||||||||||||||||||||||||||||||| ||||  | ||||||||||
Sbjct: 1  tgcatattatttgctctttggtgattttagctgtatggtgtgtatg--tgttccatagag 58

                                         
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
          |||||||||||||||||||||||||| ||||
Sbjct: 59 ctttattaccaaaaaccaaatggtttttgca 89




>37127_dse-mir-9b:mirbase
          Length = 89

 Score =  135 bits (68), Expect = 6e-33
 Identities = 86/91 (94%), Gaps = 2/91 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
          ||||||||||||| ||||||||||||||||||||||||||| || ||||  |||||||||
Sbjct: 1  tgcatattatttggtctttggtgattttagctgtatggtgtataagtat--tccatagag 58

                                         
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
          |||||||||||||||||||||||||||||||
Sbjct: 59 ctttattaccaaaaaccaaatggtttctgca 89




>37416_dwi-mir-9b-1:mirbase
          Length = 90

 Score =  123 bits (62), Expect = 2e-29
 Identities = 83/90 (92%)
 Strand = Plus / Plus

                                                                      
Query: 2  gcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagagc 61
          |||||||||||| ||||||||||||||||||||||||||| |  | ||| ||||||||||
Sbjct: 1  gcatattatttggtctttggtgattttagctgtatggtgtatgagcataatccatagagc 60

                                        
Query: 62 tttattaccaaaaaccaaatggtttctgca 91
          ||||||||||||||||||||||||| ||||
Sbjct: 61 tttattaccaaaaaccaaatggtttttgca 90




>37417_dwi-mir-9b-2:mirbase
          Length = 90

 Score =  123 bits (62), Expect = 2e-29
 Identities = 83/90 (92%)
 Strand = Plus / Plus

                                                                      
Query: 2  gcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagagc 61
          |||||||||||| ||||||||||||||||||||||||||| |  | ||| ||||||||||
Sbjct: 1  gcatattatttggtctttggtgattttagctgtatggtgtatgagcataatccatagagc 60

                                        
Query: 62 tttattaccaaaaaccaaatggtttctgca 91
          ||||||||||||||||||||||||| ||||
Sbjct: 61 tttattaccaaaaaccaaatggtttttgca 90




>37341_dvi-mir-9b:mirbase
          Length = 89

 Score =  119 bits (60), Expect = 4e-28
 Identities = 84/91 (92%), Gaps = 2/91 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
          ||||||||||||||||||||||||||||||||||||||||  |  |  ||||||||||||
Sbjct: 1  tgcatattatttgctctttggtgattttagctgtatggtg--tgcgcgtattccatagag 58

                                         
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
          |||||||||||||||||||||||||| ||||
Sbjct: 59 ctttattaccaaaaaccaaatggtttttgca 89




>36089_dan-mir-9b:mirbase
          Length = 88

 Score =  113 bits (57), Expect = 2e-26
 Identities = 83/91 (91%), Gaps = 3/91 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
          |||| |||||||| ||||||||||||||||||||||||||| |    |||||||||||||
Sbjct: 1  tgcacattatttgttctttggtgattttagctgtatggtgtctc---atattccatagag 57

                                         
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
          |||||||||||||||||||||||||| ||||
Sbjct: 58 ctttattaccaaaaaccaaatggtttttgca 88




>36765_dmo-mir-9b:mirbase
          Length = 89

 Score =  105 bits (53), Expect = 5e-24
 Identities = 77/84 (91%), Gaps = 2/84 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
          ||||||||||||| ||||||||||||||||||||||||||  |  |  ||||||||||||
Sbjct: 1  tgcatattatttgttctttggtgattttagctgtatggtg--tgcgcgtattccatagag 58

                                  
Query: 61 ctttattaccaaaaaccaaatggt 84
          ||||||||||||||||||||||||
Sbjct: 59 ctttattaccaaaaaccaaatggt 82




>36255_dgr-mir-9b:mirbase
          Length = 89

 Score =  103 bits (52), Expect = 2e-23
 Identities = 82/91 (90%), Gaps = 2/91 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
          |||||||||||||||||||||||||||||||| |||||||  |  | ||| |||| ||||
Sbjct: 1  tgcatattatttgctctttggtgattttagctctatggtg--tgcgcataatccacagag 58

                                         
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
          |||||||||||||||||||||||||| ||||
Sbjct: 59 ctttattaccaaaaaccaaatggtttttgca 89




>36838_dpe-mir-9b:mirbase
          Length = 91

 Score = 93.7 bits (47), Expect = 2e-20
 Identities = 80/91 (87%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
          |||| |||||||| ||||||||||||||||||||||||||| |||  |   |||||||||
Sbjct: 1  tgcacattatttgatctttggtgattttagctgtatggtgtatatcaaagatccatagag 60

                                         
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
          |||||| ||||||| ||||||||||| ||||
Sbjct: 61 ctttatcaccaaaacccaaatggtttttgca 91




>36914_dps-mir-9b:mirbase
          Length = 91

 Score = 93.7 bits (47), Expect = 2e-20
 Identities = 80/91 (87%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
          |||| |||||||| ||||||||||||||||||||||||||| |||  |   |||||||||
Sbjct: 1  tgcacattatttgatctttggtgattttagctgtatggtgtatatcaaagatccatagag 60

                                         
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
          |||||| ||||||| ||||||||||| ||||
Sbjct: 61 ctttatcaccaaaacccaaatggtttttgca 91




>35174_aae-mir-9b:mirbase
          Length = 92

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 15 tctttggtgattttagctgtatg 37
          |||||||||||||||||||||||
Sbjct: 15 tctttggtgattttagctgtatg 37




>35276_aga-mir-9b:mirbase
          Length = 93

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 16 ctttggtgattttagctgtatg 37
          ||||||||||||||||||||||
Sbjct: 16 ctttggtgattttagctgtatg 37