miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36349_dme-mir-9b:mirbase
Length = 91
Score = 180 bits (91), Expect = 1e-46
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
|||||||||||||||||||||||||||||||
Sbjct: 61 ctttattaccaaaaaccaaatggtttctgca 91
>37496_dya-mir-9b:mirbase
Length = 91
Score = 141 bits (71), Expect = 1e-34
Identities = 86/91 (94%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
||||||||||||||||||||||||||||||||||||||||| | | | | ||||||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagag 60
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
|||||||||||||||||||||||||||||||
Sbjct: 61 ctttattaccaaaaaccaaatggtttctgca 91
>36167_der-mir-9b:mirbase
Length = 89
Score = 135 bits (68), Expect = 6e-33
Identities = 86/91 (94%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgtatg--tgttccatagag 58
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
|||||||||||||||||||||||||| ||||
Sbjct: 59 ctttattaccaaaaaccaaatggtttttgca 89
>37127_dse-mir-9b:mirbase
Length = 89
Score = 135 bits (68), Expect = 6e-33
Identities = 86/91 (94%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
||||||||||||| ||||||||||||||||||||||||||| || |||| |||||||||
Sbjct: 1 tgcatattatttggtctttggtgattttagctgtatggtgtataagtat--tccatagag 58
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
|||||||||||||||||||||||||||||||
Sbjct: 59 ctttattaccaaaaaccaaatggtttctgca 89
>37416_dwi-mir-9b-1:mirbase
Length = 90
Score = 123 bits (62), Expect = 2e-29
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 2 gcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagagc 61
|||||||||||| ||||||||||||||||||||||||||| | | ||| ||||||||||
Sbjct: 1 gcatattatttggtctttggtgattttagctgtatggtgtatgagcataatccatagagc 60
Query: 62 tttattaccaaaaaccaaatggtttctgca 91
||||||||||||||||||||||||| ||||
Sbjct: 61 tttattaccaaaaaccaaatggtttttgca 90
>37417_dwi-mir-9b-2:mirbase
Length = 90
Score = 123 bits (62), Expect = 2e-29
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 2 gcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagagc 61
|||||||||||| ||||||||||||||||||||||||||| | | ||| ||||||||||
Sbjct: 1 gcatattatttggtctttggtgattttagctgtatggtgtatgagcataatccatagagc 60
Query: 62 tttattaccaaaaaccaaatggtttctgca 91
||||||||||||||||||||||||| ||||
Sbjct: 61 tttattaccaaaaaccaaatggtttttgca 90
>37341_dvi-mir-9b:mirbase
Length = 89
Score = 119 bits (60), Expect = 4e-28
Identities = 84/91 (92%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
|||||||||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtg--tgcgcgtattccatagag 58
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
|||||||||||||||||||||||||| ||||
Sbjct: 59 ctttattaccaaaaaccaaatggtttttgca 89
>36089_dan-mir-9b:mirbase
Length = 88
Score = 113 bits (57), Expect = 2e-26
Identities = 83/91 (91%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
|||| |||||||| ||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 1 tgcacattatttgttctttggtgattttagctgtatggtgtctc---atattccatagag 57
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
|||||||||||||||||||||||||| ||||
Sbjct: 58 ctttattaccaaaaaccaaatggtttttgca 88
>36765_dmo-mir-9b:mirbase
Length = 89
Score = 105 bits (53), Expect = 5e-24
Identities = 77/84 (91%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
||||||||||||| |||||||||||||||||||||||||| | | ||||||||||||
Sbjct: 1 tgcatattatttgttctttggtgattttagctgtatggtg--tgcgcgtattccatagag 58
Query: 61 ctttattaccaaaaaccaaatggt 84
||||||||||||||||||||||||
Sbjct: 59 ctttattaccaaaaaccaaatggt 82
>36255_dgr-mir-9b:mirbase
Length = 89
Score = 103 bits (52), Expect = 2e-23
Identities = 82/91 (90%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
|||||||||||||||||||||||||||||||| ||||||| | | ||| |||| ||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctctatggtg--tgcgcataatccacagag 58
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
|||||||||||||||||||||||||| ||||
Sbjct: 59 ctttattaccaaaaaccaaatggtttttgca 89
>36838_dpe-mir-9b:mirbase
Length = 91
Score = 93.7 bits (47), Expect = 2e-20
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
|||| |||||||| ||||||||||||||||||||||||||| ||| | |||||||||
Sbjct: 1 tgcacattatttgatctttggtgattttagctgtatggtgtatatcaaagatccatagag 60
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
|||||| ||||||| ||||||||||| ||||
Sbjct: 61 ctttatcaccaaaacccaaatggtttttgca 91
>36914_dps-mir-9b:mirbase
Length = 91
Score = 93.7 bits (47), Expect = 2e-20
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
|||| |||||||| ||||||||||||||||||||||||||| ||| | |||||||||
Sbjct: 1 tgcacattatttgatctttggtgattttagctgtatggtgtatatcaaagatccatagag 60
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
|||||| ||||||| ||||||||||| ||||
Sbjct: 61 ctttatcaccaaaacccaaatggtttttgca 91
>35174_aae-mir-9b:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tctttggtgattttagctgtatg 37
|||||||||||||||||||||||
Sbjct: 15 tctttggtgattttagctgtatg 37
>35276_aga-mir-9b:mirbase
Length = 93
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 ctttggtgattttagctgtatg 37
||||||||||||||||||||||
Sbjct: 16 ctttggtgattttagctgtatg 37
