miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36172_der-mir-13a:mirbase
          Length = 75

 Score =  149 bits (75), Expect = 3e-37
 Identities = 75/75 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60

                         
Query: 61 ttgatgagtttcgtg 75
          |||||||||||||||
Sbjct: 61 ttgatgagtttcgtg 75




>36360_dme-mir-13a:mirbase
          Length = 75

 Score =  149 bits (75), Expect = 3e-37
 Identities = 75/75 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60

                         
Query: 61 ttgatgagtttcgtg 75
          |||||||||||||||
Sbjct: 61 ttgatgagtttcgtg 75




>37132_dse-mir-13a:mirbase
          Length = 75

 Score =  149 bits (75), Expect = 3e-37
 Identities = 75/75 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60

                         
Query: 61 ttgatgagtttcgtg 75
          |||||||||||||||
Sbjct: 61 ttgatgagtttcgtg 75




>37208_dsi-mir-13a:mirbase
          Length = 75

 Score =  149 bits (75), Expect = 3e-37
 Identities = 75/75 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60

                         
Query: 61 ttgatgagtttcgtg 75
          |||||||||||||||
Sbjct: 61 ttgatgagtttcgtg 75




>37500_dya-mir-13a:mirbase
          Length = 75

 Score =  141 bits (71), Expect = 8e-35
 Identities = 74/75 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60
          |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1  tacgtaactcctcaaagggttgtgaaatgtcgcctattatctactcatatcacagccatt 60

                         
Query: 61 ttgatgagtttcgtg 75
          |||||||||||||||
Sbjct: 61 ttgatgagtttcgtg 75




>36094_dan-mir-13a:mirbase
          Length = 74

 Score =  109 bits (55), Expect = 3e-25
 Identities = 71/75 (94%), Gaps = 1/75 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60
          ||||||||||||||||||| |||||||||| | | |||||||||||||||||||||||||
Sbjct: 1  tacgtaactcctcaaagggctgtgaaatgttgcc-attatctactcatatcacagccatt 59

                         
Query: 61 ttgatgagtttcgtg 75
          |||||||||||||||
Sbjct: 60 ttgatgagtttcgtg 74




>36260_dgr-mir-13a:mirbase
          Length = 74

 Score = 81.8 bits (41), Expect = 6e-17
 Identities = 66/73 (90%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                      
Query: 3  cgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatttt 62
          |||||||| |||| |||||||||||||| |  ||||||| | ||||||||||||||||||
Sbjct: 3  cgtaactcttcaaggggttgtgaaatgtggg-tattatcaagtcatatcacagccatttt 61

                       
Query: 63 gatgagtttcgtg 75
          |||||||||||||
Sbjct: 62 gatgagtttcgtg 74




>36770_dmo-mir-13a:mirbase
          Length = 74

 Score = 81.8 bits (41), Expect = 6e-17
 Identities = 66/73 (90%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                      
Query: 3  cgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatttt 62
          |||||||| |||| |||||||||||||| | | |||||| | ||||||||||||||||||
Sbjct: 3  cgtaactcttcaaggggttgtgaaatgtagcc-attatcaagtcatatcacagccatttt 61

                       
Query: 63 gatgagtttcgtg 75
          |||||||||||||
Sbjct: 62 gatgagtttcgtg 74




>37346_dvi-mir-13a:mirbase
          Length = 74

 Score = 73.8 bits (37), Expect = 1e-14
 Identities = 65/73 (89%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                      
Query: 3  cgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatttt 62
          |||||||| |||| |||||||||||||| | |  ||||| | ||||||||||||||||||
Sbjct: 3  cgtaactcttcaaggggttgtgaaatgttgccg-ttatcaagtcatatcacagccatttt 61

                       
Query: 63 gatgagtttcgtg 75
          |||||||||||||
Sbjct: 62 gatgagtttcgtg 74




>36843_dpe-mir-13a:mirbase
          Length = 74

 Score = 69.9 bits (35), Expect = 2e-13
 Identities = 66/75 (88%), Gaps = 1/75 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60
          |||||||| | ||||| ||||||||||||| |  | ||||| | ||||||||||||||||
Sbjct: 1  tacgtaacccatcaaacggttgtgaaatgttgcat-ttatcaaatcatatcacagccatt 59

                         
Query: 61 ttgatgagtttcgtg 75
          |||||||||||||||
Sbjct: 60 ttgatgagtttcgtg 74




>36919_dps-mir-13a:mirbase
          Length = 74

 Score = 69.9 bits (35), Expect = 2e-13
 Identities = 66/75 (88%), Gaps = 1/75 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60
          |||||||| | ||||| ||||||||||||| |  | ||||| | ||||||||||||||||
Sbjct: 1  tacgtaacccatcaaacggttgtgaaatgttgcat-ttatcaaatcatatcacagccatt 59

                         
Query: 61 ttgatgagtttcgtg 75
          |||||||||||||||
Sbjct: 60 ttgatgagtttcgtg 74




>37423_dwi-mir-13a:mirbase
          Length = 78

 Score = 65.9 bits (33), Expect = 4e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 43 actcatatcacagccattttgatgagtttcgtg 75
          |||||||||||||||||||||||||||||||||
Sbjct: 46 actcatatcacagccattttgatgagtttcgtg 78




>35352_ame-mir-13a:mirbase
          Length = 100

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 45 tcatatcacagccattttgatgag 68
          ||||||||||||||||||||||||
Sbjct: 61 tcatatcacagccattttgatgag 84




>36845_dpe-mir-13b-2:mirbase
          Length = 66

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 44 ctcatatcacagccattttgatgagttt 71
          ||||||||||||||||||||| ||||||
Sbjct: 39 ctcatatcacagccattttgacgagttt 66




>36921_dps-mir-13b-2:mirbase
          Length = 69

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 44 ctcatatcacagccattttgatgagttt 71
          ||||||||||||||||||||| ||||||
Sbjct: 41 ctcatatcacagccattttgacgagttt 68




>37424_dwi-mir-13b-1:mirbase
          Length = 71

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 40 tctactcatatcacagccattttgatgagttt 71
          |||| |||||||||||||||||||| ||||||
Sbjct: 38 tctattcatatcacagccattttgacgagttt 69




>35281_aga-mir-13b:mirbase
          Length = 94

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 45 tcatatcacagccattttgatgagttt 71
          |||||||||||||||||||| ||||||
Sbjct: 53 tcatatcacagccattttgacgagttt 79




>36011_cqu-mir-13:mirbase
          Length = 82

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 45 tcatatcacagccattttgatgagttt 71
          |||||||||||||||||||| ||||||
Sbjct: 52 tcatatcacagccattttgacgagttt 78




>36095_dan-mir-13b-1:mirbase
          Length = 69

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 45 tcatatcacagccattttgatgagttt 71
          |||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67




>36096_dan-mir-13b-2:mirbase
          Length = 66

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 45 tcatatcacagccattttgatgagttt 71
          |||||||||||||||||||| ||||||
Sbjct: 39 tcatatcacagccattttgacgagttt 65




>36173_der-mir-13b-1:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 45 tcatatcacagccattttgatgagttt 71
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>36174_der-mir-13b-2:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 45 tcatatcacagccattttgatgagttt 71
          |||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67




>36261_dgr-mir-13b-1:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 45 tcatatcacagccattttgatgagttt 71
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>36262_dgr-mir-13b-2:mirbase
          Length = 73

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 45 tcatatcacagccattttgatgagttt 71
          |||||||||||||||||||| ||||||
Sbjct: 46 tcatatcacagccattttgacgagttt 72




>36361_dme-mir-13b-1:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 45 tcatatcacagccattttgatgagttt 71
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>36362_dme-mir-13b-1:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 45 tcatatcacagccattttgatgagttt 71
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>36363_dme-mir-13b-2:mirbase
          Length = 70

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 45 tcatatcacagccattttgatgagttt 71
          |||||||||||||||||||| ||||||
Sbjct: 43 tcatatcacagccattttgacgagttt 69




>36364_dme-mir-13b-2:mirbase
          Length = 70

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 45 tcatatcacagccattttgatgagttt 71
          |||||||||||||||||||| ||||||
Sbjct: 43 tcatatcacagccattttgacgagttt 69




>36771_dmo-mir-13b-1:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 45 tcatatcacagccattttgatgagttt 71
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>36772_dmo-mir-13b-2:mirbase
          Length = 67

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 45 tcatatcacagccattttgatgagttt 71
          |||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67




>36844_dpe-mir-13b-1:mirbase
          Length = 69

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 45 tcatatcacagccattttgatgagttt 71
          |||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67




>36920_dps-mir-13b-1:mirbase
          Length = 69

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 45 tcatatcacagccattttgatgagttt 71
          |||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67




>37133_dse-mir-13b-1:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 45 tcatatcacagccattttgatgagttt 71
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>37134_dse-mir-13b-2:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 45 tcatatcacagccattttgatgagttt 71
          |||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67




>37209_dsi-mir-13b-1:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 45 tcatatcacagccattttgatgagttt 71
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>37210_dsi-mir-13b-2:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 45 tcatatcacagccattttgatgagttt 71
          |||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67




>37347_dvi-mir-13b-1:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 45 tcatatcacagccattttgatgagttt 71
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>37348_dvi-mir-13b-2:mirbase
          Length = 73

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 45 tcatatcacagccattttgatgagttt 71
          |||||||||||||||||||| ||||||
Sbjct: 46 tcatatcacagccattttgacgagttt 72




>37501_dya-mir-13b-1:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 45 tcatatcacagccattttgatgagttt 71
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>37502_dya-mir-13b-2:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 45 tcatatcacagccattttgatgagttt 71
          |||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67




>37572_ngi-mir-13a:mirbase
          Length = 85

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 46 catatcacagccattttgatgag 68
          |||||||||||||||||||||||
Sbjct: 49 catatcacagccattttgatgag 71




>37606_nlo-mir-13a:mirbase
          Length = 85

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 46 catatcacagccattttgatgag 68
          |||||||||||||||||||||||
Sbjct: 49 catatcacagccattttgatgag 71




>37639_nvi-mir-13a:mirbase
          Length = 103

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 46 catatcacagccattttgatgag 68
          |||||||||||||||||||||||
Sbjct: 65 catatcacagccattttgatgag 87




>35180_aae-mir-13:mirbase
          Length = 84

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 45 tcatatcacagccattttgatgagtt 70
          |||||||||||||||||||| |||||
Sbjct: 51 tcatatcacagccattttgacgagtt 76




>37425_dwi-mir-13b-2:mirbase
          Length = 67

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 45 tcatatcacagccattttgatgagtt 70
          |||||||||||||||||||| |||||
Sbjct: 41 tcatatcacagccattttgacgagtt 66




>35051_api-mir-13a:mirbase
          Length = 61

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 45 tcatatcacagccattttgatgag 68
          |||||||||||||| |||||||||
Sbjct: 37 tcatatcacagccactttgatgag 60




>37713_tca-mir-13b:mirbase
          Length = 74

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 48 tatcacagccattttgatgagttt 71
          ||||||||||||||||| ||||||
Sbjct: 46 tatcacagccattttgacgagttt 69




>37714_tca-mir-13b:mirbase
          Length = 74

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 48 tatcacagccattttgatgagttt 71
          ||||||||||||||||| ||||||
Sbjct: 46 tatcacagccattttgacgagttt 69




>35527_bmo-mir-13b:mirbase
          Length = 80

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 44 ctcatatcacagccatttt 62
          |||||||||||||||||||
Sbjct: 44 ctcatatcacagccatttt 62