miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36371_dme-mir-33:mirbase
          Length = 99

 Score =  196 bits (99), Expect = 2e-51
 Identities = 99/99 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ctcttcctctggagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgctt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ctcttcctctggagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgctt 60

                                                 
Query: 61 caggcaatacaacttcagtgcaagctctgtgcatttcac 99
          |||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caggcaatacaacttcagtgcaagctctgtgcatttcac 99




>37138_dse-mir-33:mirbase
          Length = 90

 Score =  176 bits (89), Expect = 2e-45
 Identities = 89/89 (100%)
 Strand = Plus / Plus

                                                                      
Query: 11 ggagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaatac 70
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  ggagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaatac 61

                                       
Query: 71 aacttcagtgcaagctctgtgcatttcac 99
          |||||||||||||||||||||||||||||
Sbjct: 62 aacttcagtgcaagctctgtgcatttcac 90




>37214_dsi-mir-33:mirbase
          Length = 90

 Score =  176 bits (89), Expect = 2e-45
 Identities = 89/89 (100%)
 Strand = Plus / Plus

                                                                      
Query: 11 ggagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaatac 70
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  ggagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaatac 61

                                       
Query: 71 aacttcagtgcaagctctgtgcatttcac 99
          |||||||||||||||||||||||||||||
Sbjct: 62 aacttcagtgcaagctctgtgcatttcac 90




>36178_der-mir-33:mirbase
          Length = 90

 Score =  174 bits (88), Expect = 8e-45
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                      
Query: 12 gagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaataca 71
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3  gagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaataca 62

                                      
Query: 72 acttcagtgcaagctctgtgcatttcac 99
          ||||||||||||||||||||||||||||
Sbjct: 63 acttcagtgcaagctctgtgcatttcac 90




>37506_dya-mir-33:mirbase
          Length = 90

 Score =  167 bits (84), Expect = 2e-42
 Identities = 87/88 (98%)
 Strand = Plus / Plus

                                                                      
Query: 12 gagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaataca 71
          |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3  gagatgtcacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaataca 62

                                      
Query: 72 acttcagtgcaagctctgtgcatttcac 99
          ||||||||||||||||||||||||||||
Sbjct: 63 acttcagtgcaagctctgtgcatttcac 90




>36100_dan-mir-33:mirbase
          Length = 90

 Score =  137 bits (69), Expect = 2e-33
 Identities = 84/89 (94%)
 Strand = Plus / Plus

                                                                      
Query: 11 ggagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaatac 70
          ||||||| |||| |||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 2  ggagatgtcacgcaggtgcattgtagtcgcattgtctgtcccacttgctccaggcaatac 61

                                       
Query: 71 aacttcagtgcaagctctgtgcatttcac 99
          |||| ||||||||||||||||||||||||
Sbjct: 62 aactgcagtgcaagctctgtgcatttcac 90




>36849_dpe-mir-33:mirbase
          Length = 90

 Score =  113 bits (57), Expect = 2e-26
 Identities = 82/89 (92%), Gaps = 1/89 (1%)
 Strand = Plus / Plus

                                                                      
Query: 11 ggagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattg-cttcaggcaata 69
          |||||||||||| ||||||||||||||||||||||||||||   |||  |||||||||||
Sbjct: 2  ggagatgacacgcaggtgcattgtagtcgcattgtctgtccatcttgatttcaggcaata 61

                                       
Query: 70 caacttcagtgcaagctctgtgcatttca 98
          ||||| |||||||||||||||||||||||
Sbjct: 62 caactgcagtgcaagctctgtgcatttca 90




>36925_dps-mir-33:mirbase
          Length = 91

 Score =  105 bits (53), Expect = 6e-24
 Identities = 81/89 (91%), Gaps = 1/89 (1%)
 Strand = Plus / Plus

                                                                      
Query: 11 ggagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattg-cttcaggcaata 69
          |||||||||||| ||||||||||||||||||||||||||||   |||  |||||||||||
Sbjct: 3  ggagatgacacgcaggtgcattgtagtcgcattgtctgtccatcttgatttcaggcaata 62

                                       
Query: 70 caacttcagtgcaagctctgtgcatttca 98
          ||||| || ||||||||||||||||||||
Sbjct: 63 caactgcaatgcaagctctgtgcatttca 91




>36266_dgr-mir-33:mirbase
          Length = 92

 Score = 87.7 bits (44), Expect = 1e-18
 Identities = 74/83 (89%), Gaps = 2/83 (2%)
 Strand = Plus / Plus

                                                                      
Query: 19 cacgaaggtgcattgtagtcgcattgtctgtcc--caattgcttcaggcaatacaacttc 76
          |||||||||||||||||||||||||||||||||   |||||| |  |||||||||||| |
Sbjct: 10 cacgaaggtgcattgtagtcgcattgtctgtccaaaaattgcatgcggcaatacaactgc 69

                                 
Query: 77 agtgcaagctctgtgcatttcac 99
          ||||||||||| ||||| |||||
Sbjct: 70 agtgcaagctccgtgcagttcac 92




>37352_dvi-mir-33:mirbase
          Length = 92

 Score = 69.9 bits (35), Expect = 3e-13
 Identities = 68/78 (87%), Gaps = 2/78 (2%)
 Strand = Plus / Plus

                                                                      
Query: 24 aggtgcattgtagtcgcattgtctgtcccaa--ttgcttcaggcaatacaacttcagtgc 81
          ||||||||||||||||||||||||||| |||  ||||    |||||||||||| ||||||
Sbjct: 15 aggtgcattgtagtcgcattgtctgtctcaaatttgcccgcggcaatacaactgcagtgc 74

                            
Query: 82 aagctctgtgcatttcac 99
          |||||| ||||| |||||
Sbjct: 75 aagctccgtgcagttcac 92




>37429_dwi-mir-33:mirbase
          Length = 106

 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 18 acacgaaggtgcattgtagtcgcattgtctgt 49
          ||||||||||||||||||||||||||||||||
Sbjct: 7  acacgaaggtgcattgtagtcgcattgtctgt 38



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 59 ttcaggcaatacaacttcagtgcaagct 86
          |||||||||||||||| |||||||||||
Sbjct: 69 ttcaggcaatacaactgcagtgcaagct 96




>36776_dmo-mir-33:mirbase
          Length = 93

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 24 aggtgcattgtagtcgcattgtctgt 49
          ||||||||||||||||||||||||||
Sbjct: 15 aggtgcattgtagtcgcattgtctgt 40



 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 63 ggcaatacaacttcagtgcaagctctgtgcatttcac 99
          |||||||||||| |||||||||||| ||||| |||||
Sbjct: 57 ggcaatacaactgcagtgcaagctccgtgcagttcac 93