miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36376_dme-mir-79:mirbase
          Length = 97

 Score =  192 bits (97), Expect = 3e-50
 Identities = 97/97 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgaagctgacttgccattgctttggcgctttagctgtatgatagatttaaactacttcat 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgaagctgacttgccattgctttggcgctttagctgtatgatagatttaaactacttcat 60

                                               
Query: 61 aaagctagattaccaaagcattggcttctgcaggtca 97
          |||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaagctagattaccaaagcattggcttctgcaggtca 97




>36180_der-mir-79:mirbase
          Length = 92

 Score =  170 bits (86), Expect = 1e-43
 Identities = 89/90 (98%)
 Strand = Plus / Plus

                                                                      
Query: 4  agctgacttgccattgctttggcgctttagctgtatgatagatttaaactacttcataaa 63
          ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  agctgccttgccattgctttggcgctttagctgtatgatagatttaaactacttcataaa 60

                                        
Query: 64 gctagattaccaaagcattggcttctgcag 93
          ||||||||||||||||||||||||||||||
Sbjct: 61 gctagattaccaaagcattggcttctgcag 90




>37140_dse-mir-79:mirbase
          Length = 92

 Score =  170 bits (86), Expect = 1e-43
 Identities = 89/90 (98%)
 Strand = Plus / Plus

                                                                      
Query: 4  agctgacttgccattgctttggcgctttagctgtatgatagatttaaactacttcataaa 63
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  agctgacttgccattgctttggcgctttagctgtatgatagatttaaactacttcataaa 60

                                        
Query: 64 gctagattaccaaagcattggcttctgcag 93
          |||||||||||||||||||||||| |||||
Sbjct: 61 gctagattaccaaagcattggcttgtgcag 90




>37508_dya-mir-79:mirbase
          Length = 92

 Score =  163 bits (82), Expect = 3e-41
 Identities = 88/90 (97%)
 Strand = Plus / Plus

                                                                      
Query: 4  agctgacttgccattgctttggcgctttagctgtatgatagatttaaactacttcataaa 63
          ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1  agctgccttgccattgctttggcgctttagctgtatgatagatttatactacttcataaa 60

                                        
Query: 64 gctagattaccaaagcattggcttctgcag 93
          ||||||||||||||||||||||||||||||
Sbjct: 61 gctagattaccaaagcattggcttctgcag 90




>36102_dan-mir-79:mirbase
          Length = 91

 Score =  129 bits (65), Expect = 4e-31
 Identities = 75/77 (97%), Gaps = 1/77 (1%)
 Strand = Plus / Plus

                                                                      
Query: 18 tgctttggcgctttagctgtatgatagatttaaactacttcataaagctagattaccaaa 77
          |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 15 tgctttggcgctttagctgtatgatagatttaaa-tacttcataaagctagattaccaaa 73

                           
Query: 78 gcattggcttctgcagg 94
          ||||||||||| |||||
Sbjct: 74 gcattggcttccgcagg 90




>36851_dpe-mir-79:mirbase
          Length = 77

 Score =  129 bits (65), Expect = 4e-31
 Identities = 68/69 (98%)
 Strand = Plus / Plus

                                                                      
Query: 18 tgctttggcgctttagctgtatgatagatttaaactacttcataaagctagattaccaaa 77
          |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 8  tgctttggcgctttagctgtatgatagatttaaaatacttcataaagctagattaccaaa 67

                   
Query: 78 gcattggct 86
          |||||||||
Sbjct: 68 gcattggct 76




>36927_dps-mir-79:mirbase
          Length = 84

 Score =  129 bits (65), Expect = 4e-31
 Identities = 68/69 (98%)
 Strand = Plus / Plus

                                                                      
Query: 18 tgctttggcgctttagctgtatgatagatttaaactacttcataaagctagattaccaaa 77
          |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 13 tgctttggcgctttagctgtatgatagatttaaaatacttcataaagctagattaccaaa 72

                   
Query: 78 gcattggct 86
          |||||||||
Sbjct: 73 gcattggct 81




>36778_dmo-mir-79:mirbase
          Length = 76

 Score =  127 bits (64), Expect = 2e-30
 Identities = 74/76 (97%), Gaps = 1/76 (1%)
 Strand = Plus / Plus

                                                                      
Query: 11 ttgccattgctttggcgctttagctgtatgatagatttaaactacttcataaagctagat 70
          ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1  ttgccgttgctttggcgctttagctgtatgatagatttaaa-tacttcataaagctagat 59

                          
Query: 71 taccaaagcattggct 86
          ||||||||||||||||
Sbjct: 60 taccaaagcattggct 75




>37354_dvi-mir-79:mirbase
          Length = 92

 Score =  117 bits (59), Expect = 2e-27
 Identities = 72/75 (96%), Gaps = 1/75 (1%)
 Strand = Plus / Plus

                                                                      
Query: 12 tgccattgctttggcgctttagctgtatgatagatttaaactacttcataaagctagatt 71
          |||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 10 tgccgttgctttggcgctttagctgtatgatagatttgaa-tacttcataaagctagatt 68

                         
Query: 72 accaaagcattggct 86
          |||||||||||||||
Sbjct: 69 accaaagcattggct 83




>37431_dwi-mir-79-1:mirbase
          Length = 76

 Score =  105 bits (53), Expect = 6e-24
 Identities = 66/69 (95%), Gaps = 1/69 (1%)
 Strand = Plus / Plus

                                                                      
Query: 18 tgctttggcgctttagctgtatgatagatttaaactacttcataaagctagattaccaaa 77
          ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 8  tgctttggcgctttagctgtatgatagatttga-ctacttcataaagctagattaccaaa 66

                   
Query: 78 gcattggct 86
          |||| ||||
Sbjct: 67 gcatgggct 75




>37432_dwi-mir-79-2:mirbase
          Length = 76

 Score =  105 bits (53), Expect = 6e-24
 Identities = 66/69 (95%), Gaps = 1/69 (1%)
 Strand = Plus / Plus

                                                                      
Query: 18 tgctttggcgctttagctgtatgatagatttaaactacttcataaagctagattaccaaa 77
          ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 8  tgctttggcgctttagctgtatgatagatttga-ctacttcataaagctagattaccaaa 66

                   
Query: 78 gcattggct 86
          |||| ||||
Sbjct: 67 gcatgggct 75




>36268_dgr-mir-79:mirbase
          Length = 76

 Score =  101 bits (51), Expect = 9e-23
 Identities = 61/63 (96%), Gaps = 1/63 (1%)
 Strand = Plus / Plus

                                                                      
Query: 19 gctttggcgctttagctgtatgatagatttaaactacttcataaagctagattaccaaag 78
          |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 9  gctttggcgctttagctgtatgatagatttgaa-tacttcataaagctagattaccaaag 67

             
Query: 79 cat 81
          |||
Sbjct: 68 cat 70




>35284_aga-mir-79:mirbase
          Length = 94

 Score = 95.6 bits (48), Expect = 6e-21
 Identities = 61/64 (95%), Gaps = 1/64 (1%)
 Strand = Plus / Plus

                                                                      
Query: 19 gctttggcgctttagctgtatgataga-tttaaactacttcataaagctagattaccaaa 77
          ||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||
Sbjct: 17 gctttggcgctttagctgtatgatagaatttgaactatttcataaagctagattaccaaa 76

              
Query: 78 gcat 81
          ||||
Sbjct: 77 gcat 80




>35186_aae-mir-79:mirbase
          Length = 96

 Score = 87.7 bits (44), Expect = 1e-18
 Identities = 60/64 (93%), Gaps = 1/64 (1%)
 Strand = Plus / Plus

                                                                      
Query: 18 tgctttggcgctttagctgtatgatagatttaaactacttcataaagctagattaccaaa 77
          |||||||||||||||||||||||||||| || || || ||||||||||||||||||||||
Sbjct: 15 tgctttggcgctttagctgtatgatagaatttaa-tatttcataaagctagattaccaaa 73

              
Query: 78 gcat 81
          ||||
Sbjct: 74 gcat 77




>36016_cqu-mir-79:mirbase
          Length = 75

 Score = 87.7 bits (44), Expect = 1e-18
 Identities = 60/64 (93%), Gaps = 1/64 (1%)
 Strand = Plus / Plus

                                                                      
Query: 18 tgctttggcgctttagctgtatgatagatttaaactacttcataaagctagattaccaaa 77
          |||||||||||||||||||||||||||| || || || ||||||||||||||||||||||
Sbjct: 8  tgctttggcgctttagctgtatgatagaatttaa-tatttcataaagctagattaccaaa 66

              
Query: 78 gcat 81
          ||||
Sbjct: 67 gcat 70




>35520_bmo-mir-9b:mirbase
          Length = 90

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                    
Query: 56 ttcataaagctagattaccaaagcat 81
          ||||||||||||||||||||||||||
Sbjct: 40 ttcataaagctagattaccaaagcat 15




>35533_bmo-mir-79:mirbase
          Length = 100

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 56 ttcataaagctagattaccaaagcat 81
          ||||||||||||||||||||||||||
Sbjct: 55 ttcataaagctagattaccaaagcat 80




>35346_ame-mir-9b:mirbase
          Length = 92

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                  
Query: 57 tcataaagctagattaccaaagca 80
          ||||||||||||||||||||||||
Sbjct: 40 tcataaagctagattaccaaagca 17




>35360_ame-mir-79:mirbase
          Length = 100

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 57 tcataaagctagattaccaaagca 80
          ||||||||||||||||||||||||
Sbjct: 64 tcataaagctagattaccaaagca 87




>37699_tca-mir-9b:mirbase
          Length = 169

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 57  tcataaagctagattaccaaagca 80
           ||||||||||||||||||||||||
Sbjct: 92  tcataaagctagattaccaaagca 115




>37700_tca-mir-9b:mirbase
          Length = 169

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 57  tcataaagctagattaccaaagca 80
           ||||||||||||||||||||||||
Sbjct: 92  tcataaagctagattaccaaagca 115




>38743_cte-mir-79:mirbase
          Length = 101

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 53 tacttcataaagctagattaccaaagc 79
          |||||||||||||||| ||||||||||
Sbjct: 55 tacttcataaagctaggttaccaaagc 81




>38729_cte-mir-9:mirbase
          Length = 101

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 53 tacttcataaagctagattaccaaagc 79
          |||||||||||||||| ||||||||||
Sbjct: 53 tacttcataaagctaggttaccaaagc 79




>38542_crm-mir-79:mirbase
          Length = 120

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 54 acttcataaagctagattaccaaagc 79
          ||||||||||||||| ||||||||||
Sbjct: 66 acttcataaagctaggttaccaaagc 91




>38099_bma-mir-9:mirbase
          Length = 85

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 55 cttcataaagctagattaccaaagc 79
          |||||||||||||| ||||||||||
Sbjct: 49 cttcataaagctaggttaccaaagc 73




>38107_bma-mir-79:mirbase
          Length = 85

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 55 cttcataaagctagattaccaaagc 79
          |||||||||||||| ||||||||||
Sbjct: 49 cttcataaagctaggttaccaaagc 73




>38190_cbr-mir-79:mirbase
          Length = 93

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 55 cttcataaagctagattaccaaagc 79
          |||||||||||||| ||||||||||
Sbjct: 53 cttcataaagctaggttaccaaagc 77




>38623_ppc-mir-79:mirbase
          Length = 96

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 56 ttcataaagctagattaccaaagc 79
          ||||||||||||| ||||||||||
Sbjct: 56 ttcataaagctaggttaccaaagc 79




>38316_cel-mir-79:mirbase
          Length = 98

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 56 ttcataaagctagattaccaaagc 79
          ||||||||||||| ||||||||||
Sbjct: 58 ttcataaagctaggttaccaaagc 81