miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42818_zma-MIR398b:mirbase
Length = 108
Score = 214 bits (108), Expect = 1e-56
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1 gggggcggactgggaacacatgggaatgagatgagatcattgctcggtcgtgctggcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggggcggactgggaacacatgggaatgagatgagatcattgctcggtcgtgctggcctg 60
Query: 61 ggccgtcggcgcgcgttgatcttgcatgtgttctcaggtcgcccccgg 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggccgtcggcgcgcgttgatcttgcatgtgttctcaggtcgcccccgg 108
>42588_sbi-MIR398:mirbase
Length = 109
Score = 69.9 bits (35), Expect = 5e-13
Identities = 55/60 (91%), Gaps = 5/60 (8%)
Strand = Plus / Plus
Query: 1 gggggcggactgggaacacatgggaat--gagatgagatcattgctcggtcgtgctggcc 58
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 1 gggggcggactgggaacacatgggaatgagagatgag---attgctcggtcgtgctggcc 57
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 83 tgcatgtgttctcaggtcgcccccg 107
|||||||||||||||||||||||||
Sbjct: 84 tgcatgtgttctcaggtcgcccccg 108
>42817_zma-MIR398a:mirbase
Length = 140
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 83 tgcatgtgttctcaggtcgcccccg 107
|||||||||||||||||||||||||
Sbjct: 115 tgcatgtgttctcaggtcgcccccg 139
>42645_tae-MIR398:mirbase
Length = 120
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 85 catgtgttctcaggtcgcccccg 107
|||||||||||||||||||||||
Sbjct: 83 catgtgttctcaggtcgcccccg 105
>41144_tcc-MIR398a:mirbase
Length = 125
Score = 46.1 bits (23), Expect = 7e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 86 atgtgttctcaggtcgcccccggagggccttcctt 120
|||||||||||||||||||| | ||||| ||||||
Sbjct: 84 atgtgttctcaggtcgcccctgcagggctttcctt 118
>41191_aqc-MIR398b:mirbase
Length = 93
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 tcttgcatgtgttctcaggtcgcccc 105
|||| |||||||||||||||||||||
Sbjct: 65 tcttccatgtgttctcaggtcgcccc 90
>40382_rco-MIR398b:mirbase
Length = 126
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 tcttgcatgtgttctcaggtcgcccc 105
|||| |||||||||||||||||||||
Sbjct: 94 tctttcatgtgttctcaggtcgcccc 119
>41801_bdi-MIR398c:mirbase
Length = 131
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 85 catgtgttctcaggtcgcccc 105
|||||||||||||||||||||
Sbjct: 85 catgtgttctcaggtcgcccc 105
>41799_bdi-MIR398a:mirbase
Length = 150
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 85 catgtgttctcaggtcgcccc 105
|||||||||||||||||||||
Sbjct: 94 catgtgttctcaggtcgcccc 114
>41667_vvi-MIR398c:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 85 catgtgttctcaggtcgcccc 105
|||||||||||||||||||||
Sbjct: 56 catgtgttctcaggtcgcccc 76
>41666_vvi-MIR398b:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 85 catgtgttctcaggtcgcccc 105
|||||||||||||||||||||
Sbjct: 56 catgtgttctcaggtcgcccc 76
>41447_ptc-MIR398c:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 85 catgtgttctcaggtcgcccc 105
|||||||||||||||||||||
Sbjct: 66 catgtgttctcaggtcgcccc 86
>41446_ptc-MIR398b:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 85 catgtgttctcaggtcgcccc 105
|||||||||||||||||||||
Sbjct: 54 catgtgttctcaggtcgcccc 74
>40729_mtr-MIR398b:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 85 catgtgttctcaggtcgcccc 105
|||||||||||||||||||||
Sbjct: 60 catgtgttctcaggtcgcccc 80
