miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36393_dme-mir-184:mirbase
          Length = 100

 Score =  198 bits (100), Expect = 5e-52
 Identities = 100/100 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggttggccggtgcattcgtacccttatcattctctcgccccgtgtgcacttaaagacaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggttggccggtgcattcgtacccttatcattctctcgccccgtgtgcacttaaagacaac 60

                                                   
Query: 61  tggacggagaactgataagggctcgtatcaccaattcatc 100
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tggacggagaactgataagggctcgtatcaccaattcatc 100




>36188_der-mir-184:mirbase
          Length = 88

 Score =  167 bits (84), Expect = 2e-42
 Identities = 87/88 (98%)
 Strand = Plus / Plus

                                                                      
Query: 7  ccggtgcattcgtacccttatcattctctcgccccgtgtgcacttaaagacaactggacg 66
          |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1  ccggtgcattcgtacccttatcattctctcgccccgtgtgcatttaaagacaactggacg 60

                                      
Query: 67 gagaactgataagggctcgtatcaccaa 94
          ||||||||||||||||||||||||||||
Sbjct: 61 gagaactgataagggctcgtatcaccaa 88




>37148_dse-mir-184:mirbase
          Length = 88

 Score =  167 bits (84), Expect = 2e-42
 Identities = 87/88 (98%)
 Strand = Plus / Plus

                                                                      
Query: 7  ccggtgcattcgtacccttatcattctctcgccccgtgtgcacttaaagacaactggacg 66
          |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1  ccggtgcattcgtacccttatcattctctcgccccgtgtgcatttaaagacaactggacg 60

                                      
Query: 67 gagaactgataagggctcgtatcaccaa 94
          ||||||||||||||||||||||||||||
Sbjct: 61 gagaactgataagggctcgtatcaccaa 88




>37224_dsi-mir-184:mirbase
          Length = 88

 Score =  167 bits (84), Expect = 2e-42
 Identities = 87/88 (98%)
 Strand = Plus / Plus

                                                                      
Query: 7  ccggtgcattcgtacccttatcattctctcgccccgtgtgcacttaaagacaactggacg 66
          |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1  ccggtgcattcgtacccttatcattctctcgccccgtgtgcatttaaagacaactggacg 60

                                      
Query: 67 gagaactgataagggctcgtatcaccaa 94
          ||||||||||||||||||||||||||||
Sbjct: 61 gagaactgataagggctcgtatcaccaa 88




>36937_dps-mir-184:mirbase
          Length = 100

 Score =  155 bits (78), Expect = 7e-39
 Identities = 90/94 (95%)
 Strand = Plus / Plus

                                                                       
Query: 7   ccggtgcattcgtacccttatcattctctcgccccgtgtgcacttaaagacaactggacg 66
           |||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||
Sbjct: 7   ccggtgcattcgtacccttatcattctcgcgccccgtgtgcattaaaagacaactggacg 66

                                             
Query: 67  gagaactgataagggctcgtatcaccaattcatc 100
           |||||||||||||||||||||||||||| |||||
Sbjct: 67  gagaactgataagggctcgtatcaccaactcatc 100




>36862_dpe-mir-184:mirbase
          Length = 88

 Score =  151 bits (76), Expect = 1e-37
 Identities = 85/88 (96%)
 Strand = Plus / Plus

                                                                      
Query: 7  ccggtgcattcgtacccttatcattctctcgccccgtgtgcacttaaagacaactggacg 66
          |||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||
Sbjct: 1  ccggtgcattcgtacccttatcattctcgcgccccgtgtgcattaaaagacaactggacg 60

                                      
Query: 67 gagaactgataagggctcgtatcaccaa 94
          ||||||||||||||||||||||||||||
Sbjct: 61 gagaactgataagggctcgtatcaccaa 88




>37516_dya-mir-184:mirbase
          Length = 87

 Score =  151 bits (76), Expect = 1e-37
 Identities = 86/88 (97%), Gaps = 1/88 (1%)
 Strand = Plus / Plus

                                                                      
Query: 7  ccggtgcattcgtacccttatcattctctcgccccgtgtgcacttaaagacaactggacg 66
          |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 1  ccggtgcattcgtacccttatcattctctcgccccgtgtgca-ttgaagacaactggacg 59

                                      
Query: 67 gagaactgataagggctcgtatcaccaa 94
          ||||||||||||||||||||||||||||
Sbjct: 60 gagaactgataagggctcgtatcaccaa 87




>37362_dvi-mir-184:mirbase
          Length = 98

 Score =  143 bits (72), Expect = 3e-35
 Identities = 87/92 (94%)
 Strand = Plus / Plus

                                                                      
Query: 3  ttggccggtgcattcgtacccttatcattctctcgccccgtgtgcacttaaagacaactg 62
          |||||||||||||||||||||||||||||||| |||||||||||||  |  |||||||||
Sbjct: 1  ttggccggtgcattcgtacccttatcattctcgcgccccgtgtgcatatctagacaactg 60

                                          
Query: 63 gacggagaactgataagggctcgtatcaccaa 94
          ||||||||||||||||||||||||||||||||
Sbjct: 61 gacggagaactgataagggctcgtatcaccaa 92




>36786_dmo-mir-184:mirbase
          Length = 98

 Score =  135 bits (68), Expect = 7e-33
 Identities = 86/92 (93%)
 Strand = Plus / Plus

                                                                      
Query: 3  ttggccggtgcattcgtacccttatcattctctcgccccgtgtgcacttaaagacaactg 62
          |||||||||||||||||||||||||||||||| |||||||||||||  |  | |||||||
Sbjct: 1  ttggccggtgcattcgtacccttatcattctcgcgccccgtgtgcatatctatacaactg 60

                                          
Query: 63 gacggagaactgataagggctcgtatcaccaa 94
          ||||||||||||||||||||||||||||||||
Sbjct: 61 gacggagaactgataagggctcgtatcaccaa 92




>37441_dwi-mir-184:mirbase
          Length = 88

 Score =  135 bits (68), Expect = 7e-33
 Identities = 83/88 (94%)
 Strand = Plus / Plus

                                                                      
Query: 7  ccggtgcattcgtacccttatcattctctcgccccgtgtgcacttaaagacaactggacg 66
          |||||||||||||||||||||||||||| |||||||||||||  |  |||||||||||||
Sbjct: 1  ccggtgcattcgtacccttatcattctcgcgccccgtgtgcatatctagacaactggacg 60

                                      
Query: 67 gagaactgataagggctcgtatcaccaa 94
          ||||||||||||||||||||||||||||
Sbjct: 61 gagaactgataagggctcgtatcaccaa 88




>36110_dan-mir-184:mirbase
          Length = 88

 Score =  127 bits (64), Expect = 2e-30
 Identities = 82/88 (93%)
 Strand = Plus / Plus

                                                                      
Query: 7  ccggtgcattcgtacccttatcattctctcgccccgtgtgcacttaaagacaactggacg 66
          |||||||||||||||||||||||||||| |||||||||||||     |||||||||||||
Sbjct: 1  ccggtgcattcgtacccttatcattctcgcgccccgtgtgcataatgagacaactggacg 60

                                      
Query: 67 gagaactgataagggctcgtatcaccaa 94
          ||||||||||||||||||||||||||||
Sbjct: 61 gagaactgataagggctcgtatcaccaa 88




>36277_dgr-mir-184:mirbase
          Length = 88

 Score =  119 bits (60), Expect = 4e-28
 Identities = 81/88 (92%)
 Strand = Plus / Plus

                                                                      
Query: 7  ccggtgcattcgtacccttatcattctctcgccccgtgtgcacttaaagacaactggacg 66
          |||||||||||||||||||||||||||||||||||||||| |     | |||||||||||
Sbjct: 1  ccggtgcattcgtacccttatcattctctcgccccgtgtggataactatacaactggacg 60

                                      
Query: 67 gagaactgataagggctcgtatcaccaa 94
          ||||||||||||||||||||||||||||
Sbjct: 61 gagaactgataagggctcgtatcaccaa 88




>35293_aga-mir-184:mirbase
          Length = 82

 Score = 69.9 bits (35), Expect = 3e-13
 Identities = 65/74 (87%), Gaps = 2/74 (2%)
 Strand = Plus / Plus

                                                                      
Query: 9  ggtgcattcgtacccttatcattctctcgccccgtgtgcacttaaagacaactggacgga 68
          |||||| ||| |||||||||||||| ||||||||||||  |||    |||||||||||||
Sbjct: 1  ggtgcactcgaacccttatcattctttcgccccgtgtg--ctttctaacaactggacgga 58

                        
Query: 69 gaactgataagggc 82
          ||||||||||||||
Sbjct: 59 gaactgataagggc 72




>35065_api-mir-184a:mirbase
          Length = 65

 Score = 61.9 bits (31), Expect = 8e-11
 Identities = 60/67 (89%), Gaps = 2/67 (2%)
 Strand = Plus / Plus

                                                                      
Query: 22 ccttatcattctctcgccccgtgtgcacttaaagacaactggacggagaactgataaggg 81
          |||||||||||| |||||  ||||||| || || ||||||||||||||||||||||||||
Sbjct: 1  ccttatcattct-tcgccttgtgtgcaatttaa-acaactggacggagaactgataaggg 58

                 
Query: 82 ctcgtat 88
          || ||||
Sbjct: 59 ctggtat 65




>35196_aae-mir-184:mirbase
          Length = 88

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 64/76 (84%)
 Strand = Plus / Plus

                                                                      
Query: 7  ccggtgcattcgtacccttatcattctctcgccccgtgtgcacttaaagacaactggacg 66
          |||||| ||||||||||||||||||||  ||||||||||    ||   | | ||||||||
Sbjct: 1  ccggtgtattcgtacccttatcattcttgcgccccgtgttatattgttggcgactggacg 60

                          
Query: 67 gagaactgataagggc 82
          ||||||||||||||||
Sbjct: 61 gagaactgataagggc 76




>37747_tca-mir-184:mirbase
          Length = 79

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 56 acaactggacggagaactgataagggct 83
          ||||||||||||||||||||||||||||
Sbjct: 44 acaactggacggagaactgataagggct 71




>37748_tca-mir-184:mirbase
          Length = 79

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 56 acaactggacggagaactgataagggct 83
          ||||||||||||||||||||||||||||
Sbjct: 44 acaactggacggagaactgataagggct 71




>38873_lgi-mir-184:mirbase
          Length = 101

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 58 aactggacggagaactgataagggct 83
          ||||||||||||||||||||||||||
Sbjct: 58 aactggacggagaactgataagggct 83




>35371_ame-mir-184:mirbase
          Length = 92

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 54 agacaactggacggagaactgataagggc 82
          |||| ||||||||||||||||||||||||
Sbjct: 49 agacgactggacggagaactgataagggc 77




>36025_cqu-mir-184:mirbase
          Length = 85

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                      
Query: 14 attcgtacccttatcattctctcgccccgtgtgcacttaaagacaactggacggagaact 73
          ||||| |||||||||||||| ||||||||||| |  ||     | |||||||||||||||
Sbjct: 5  attcgcacccttatcattctttcgccccgtgtactgttgtttgcgactggacggagaact 64

                   
Query: 74 gataagggc 82
          |||||||||
Sbjct: 65 gataagggc 73




>38757_cte-mir-184a:mirbase
          Length = 101

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 59 actggacggagaactgataagggc 82
          ||||||||||||||||||||||||
Sbjct: 59 actggacggagaactgataagggc 82




>24844_cin-mir-184:mirbase
          Length = 102

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 61 tggacggagaactgataagggctc 84
          ||||||||||||||||||||||||
Sbjct: 66 tggacggagaactgataagggctc 89




>34829_spu-mir-184:mirbase
          Length = 101

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 60 ctggacggagaactgataagggct 83
          ||||||||||||||||||||||||
Sbjct: 60 ctggacggagaactgataagggct 83




>34885_sko-mir-184:mirbase
          Length = 101

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 60 ctggacggagaactgataagggct 83
          ||||||||||||||||||||||||
Sbjct: 60 ctggacggagaactgataagggct 83




>34975_isc-mir-184:mirbase
          Length = 101

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 60 ctggacggagaactgataagggct 83
          ||||||||||||||||||||||||
Sbjct: 60 ctggacggagaactgataagggct 83




>35541_bmo-mir-184:mirbase
          Length = 84

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 59 actggacggagaactgataagggc 82
          ||||||||||||||||||||||||
Sbjct: 50 actggacggagaactgataagggc 73




>37581_ngi-mir-184:mirbase
          Length = 89

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 59 actggacggagaactgataagggc 82
          ||||||||||||||||||||||||
Sbjct: 52 actggacggagaactgataagggc 75




>37613_nlo-mir-184:mirbase
          Length = 89

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 59 actggacggagaactgataagggc 82
          ||||||||||||||||||||||||
Sbjct: 52 actggacggagaactgataagggc 75




>37653_nvi-mir-184:mirbase
          Length = 92

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 59 actggacggagaactgataagggc 82
          ||||||||||||||||||||||||
Sbjct: 54 actggacggagaactgataagggc 77




>24688_bfl-mir-184:mirbase
          Length = 101

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 60 ctggacggagaactgataagggc 82
          |||||||||||||||||||||||
Sbjct: 60 ctggacggagaactgataagggc 82




>34335_dre-mir-184:mirbase
          Length = 87

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 61 tggacggagaactgataagggc 82
          ||||||||||||||||||||||
Sbjct: 55 tggacggagaactgataagggc 76




>34336_dre-mir-184-2:mirbase
          Length = 79

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 61 tggacggagaactgataagggc 82
          ||||||||||||||||||||||
Sbjct: 49 tggacggagaactgataagggc 70




>25979_gga-mir-184:mirbase
          Length = 74

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 tggacggagaactgataaggg 81
          |||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73




>26487_tgu-mir-184:mirbase
          Length = 112

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 61  tggacggagaactgataaggg 81
           |||||||||||||||||||||
Sbjct: 81  tggacggagaactgataaggg 101




>26739_cfa-mir-184:mirbase
          Length = 68

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 tggacggagaactgataaggg 81
          |||||||||||||||||||||
Sbjct: 42 tggacggagaactgataaggg 62




>27065_eca-mir-184:mirbase
          Length = 70

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 tggacggagaactgataaggg 81
          |||||||||||||||||||||
Sbjct: 46 tggacggagaactgataaggg 66




>27408_mdo-mir-184:mirbase
          Length = 84

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 tggacggagaactgataaggg 81
          |||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73




>27775_mml-mir-184:mirbase
          Length = 84

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 tggacggagaactgataaggg 81
          |||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73




>28225_mne-mir-184:mirbase
          Length = 84

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 tggacggagaactgataaggg 81
          |||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73




>28491_hsa-mir-184:mirbase
          Length = 84

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 tggacggagaactgataaggg 81
          |||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73




>30259_ptr-mir-184:mirbase
          Length = 84

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 tggacggagaactgataaggg 81
          |||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73




>30873_ppy-mir-184:mirbase
          Length = 84

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 tggacggagaactgataaggg 81
          |||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73




>31900_mmu-mir-184:mirbase
          Length = 69

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 tggacggagaactgataaggg 81
          |||||||||||||||||||||
Sbjct: 45 tggacggagaactgataaggg 65




>32770_rno-mir-184:mirbase
          Length = 77

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 tggacggagaactgataaggg 81
          |||||||||||||||||||||
Sbjct: 47 tggacggagaactgataaggg 67




>33252_bta-mir-184:mirbase
          Length = 83

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 tggacggagaactgataaggg 81
          |||||||||||||||||||||
Sbjct: 52 tggacggagaactgataaggg 72




>34014_ssc-mir-184:mirbase
          Length = 83

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 tggacggagaactgataaggg 81
          |||||||||||||||||||||
Sbjct: 52 tggacggagaactgataaggg 72




>34616_fru-mir-184:mirbase
          Length = 73

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 tggacggagaactgataaggg 81
          |||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73




>34763_tni-mir-184:mirbase
          Length = 73

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 tggacggagaactgataaggg 81
          |||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73




>25809_xtr-mir-184:mirbase
          Length = 83

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 61 tggacggagaactgataagg 80
          ||||||||||||||||||||
Sbjct: 53 tggacggagaactgataagg 72




>35066_api-mir-184b:mirbase
          Length = 60

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 59 actggacggagaactgataa 78
          ||||||||||||||||||||
Sbjct: 37 actggacggagaactgataa 56