miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36396_dme-mir-190:mirbase
          Length = 100

 Score =  198 bits (100), Expect = 5e-52
 Identities = 100/100 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgaactaattgatggttccagtgagatatgtttgatattcttggttgtttcattcaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cgaactaattgatggttccagtgagatatgtttgatattcttggttgtttcattcaaaag 60

                                                   
Query: 61  ttcacccaggaatcaaacatattattactgtgaccctcgc 100
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttcacccaggaatcaaacatattattactgtgaccctcgc 100




>37225_dsi-mir-190:mirbase
          Length = 89

 Score =  168 bits (85), Expect = 5e-43
 Identities = 88/89 (98%)
 Strand = Plus / Plus

                                                                      
Query: 11 gatggttccagtgagatatgtttgatattcttggttgtttcattcaaaagttcacccagg 70
          |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1  gatggttccagtgagatatgtttgatattcttggttgtatcattcaaaagttcacccagg 60

                                       
Query: 71 aatcaaacatattattactgtgaccctcg 99
          |||||||||||||||||||||||||||||
Sbjct: 61 aatcaaacatattattactgtgaccctcg 89




>36938_dps-mir-190:mirbase
          Length = 94

 Score =  139 bits (70), Expect = 4e-34
 Identities = 76/78 (97%)
 Strand = Plus / Plus

                                                                      
Query: 16 ttccagtgagatatgtttgatattcttggttgtttcattcaaaagttcacccaggaatca 75
          |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 9  ttccagtgagatatgtttgatattcttggttgttacattcaagagttcacccaggaatca 68

                            
Query: 76 aacatattattactgtga 93
          ||||||||||||||||||
Sbjct: 69 aacatattattactgtga 86




>36026_cqu-mir-190-1:mirbase
          Length = 90

 Score = 91.7 bits (46), Expect = 9e-20
 Identities = 71/78 (91%), Gaps = 1/78 (1%)
 Strand = Plus / Plus

                                                                      
Query: 16 ttccagtgagatatgtttgatattcttggttgtttcattcaaaagt-tcacccaggaatc 74
          ||||||||||||||||||||||||||||||||||  |||  | | | |||||||||||||
Sbjct: 7  ttccagtgagatatgtttgatattcttggttgttaaattttatattatcacccaggaatc 66

                            
Query: 75 aaacatattattactgtg 92
          ||||||||||||||||||
Sbjct: 67 aaacatattattactgtg 84




>35197_aae-mir-190:mirbase
          Length = 101

 Score = 83.8 bits (42), Expect = 2e-17
 Identities = 70/78 (89%), Gaps = 1/78 (1%)
 Strand = Plus / Plus

                                                                      
Query: 16 ttccagtgagatatgtttgatattcttggttgtttcattcaaaagt-tcacccaggaatc 74
          |||| |||||||||||||||||||||||||||||  |||  | | | |||||||||||||
Sbjct: 7  ttccggtgagatatgtttgatattcttggttgttaaattttatattatcacccaggaatc 66

                            
Query: 75 aaacatattattactgtg 92
          ||||||||||||||||||
Sbjct: 67 aaacatattattactgtg 84




>36027_cqu-mir-190-2:mirbase
          Length = 90

 Score = 83.8 bits (42), Expect = 2e-17
 Identities = 70/78 (89%), Gaps = 1/78 (1%)
 Strand = Plus / Plus

                                                                      
Query: 16 ttccagtgagatatgtttgatattcttggttgtttcattcaaaagt-tcacccaggaatc 74
          |||| |||||||||||||||||||||||||||||  |||  | | | |||||||||||||
Sbjct: 7  ttccggtgagatatgtttgatattcttggttgttaaattttatattatcacccaggaatc 66

                            
Query: 75 aaacatattattactgtg 92
          ||||||||||||||||||
Sbjct: 67 aaacatattattactgtg 84




>35294_aga-mir-190:mirbase
          Length = 101

 Score = 69.9 bits (35), Expect = 3e-13
 Identities = 66/75 (88%), Gaps = 1/75 (1%)
 Strand = Plus / Plus

                                                                      
Query: 21 gtgagatatgtttgatattcttggttgtt-tcattcaaaagttcacccaggaatcaaaca 79
          |||||||||||||||||||||||||||||   |||  ||   ||||||||||||||||||
Sbjct: 21 gtgagatatgtttgatattcttggttgttaagatttcaattatcacccaggaatcaaaca 80

                         
Query: 80 tattattactgtgac 94
          ||||||||| |||||
Sbjct: 81 tattattaccgtgac 95




>35067_api-mir-190:mirbase
          Length = 68

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 21 gtgagatatgtttgatattcttggttgtt 49
          |||||||||||||||||||||||||||||
Sbjct: 4  gtgagatatgtttgatattcttggttgtt 32




>35372_ame-mir-190:mirbase
          Length = 100

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 56/64 (87%), Gaps = 2/64 (3%)
 Strand = Plus / Plus

                                                                      
Query: 24 agatatgtttgatattcttggttgtttcattcaaaagttcacccaggaatcaaacatatt 83
          |||||||||||||||||||||||||||  || |||   ||  ||||||||||||||||||
Sbjct: 25 agatatgtttgatattcttggttgttt--tttaaagaatcgaccaggaatcaaacatatt 82

              
Query: 84 atta 87
          ||||
Sbjct: 83 atta 86




>35542_bmo-mir-190:mirbase
          Length = 90

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 23 gagatatgtttgatattcttggttgttt 50
          ||||||||||||||||||||||||||||
Sbjct: 16 gagatatgtttgatattcttggttgttt 43




>37749_tca-mir-190:mirbase
          Length = 86

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 55/64 (85%), Gaps = 4/64 (6%)
 Strand = Plus / Plus

                                                                      
Query: 24 agatatgtttgatattcttggttgtttcattcaaaagttcacccaggaatcaaacatatt 83
          ||||||||||||||||||||||||| |  ||    | ||||||||||| |||||||||||
Sbjct: 14 agatatgtttgatattcttggttgtattttt----aattcacccaggagtcaaacatatt 69

              
Query: 84 atta 87
          ||||
Sbjct: 70 atta 73




>37750_tca-mir-190:mirbase
          Length = 86

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 55/64 (85%), Gaps = 4/64 (6%)
 Strand = Plus / Plus

                                                                      
Query: 24 agatatgtttgatattcttggttgtttcattcaaaagttcacccaggaatcaaacatatt 83
          ||||||||||||||||||||||||| |  ||    | ||||||||||| |||||||||||
Sbjct: 14 agatatgtttgatattcttggttgtattttt----aattcacccaggagtcaaacatatt 69

              
Query: 84 atta 87
          ||||
Sbjct: 70 atta 73




>37654_nvi-mir-190:mirbase
          Length = 96

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 24 agatatgtttgatattcttggttgt 48
          |||||||||||||||||||||||||
Sbjct: 24 agatatgtttgatattcttggttgt 48



 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 66 ccaggaatcaaacatattattac 88
          |||||||||||||||||||||||
Sbjct: 62 ccaggaatcaaacatattattac 84