miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36395_dme-mir-190:mirbase
Length = 100
Score = 198 bits (100), Expect = 5e-52
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 cgaactaattgatggttccagtgagatatgtttgatattcttggttgtttcattcaaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgaactaattgatggttccagtgagatatgtttgatattcttggttgtttcattcaaaag 60
Query: 61 ttcacccaggaatcaaacatattattactgtgaccctcgc 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcacccaggaatcaaacatattattactgtgaccctcgc 100
>37225_dsi-mir-190:mirbase
Length = 89
Score = 168 bits (85), Expect = 5e-43
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 11 gatggttccagtgagatatgtttgatattcttggttgtttcattcaaaagttcacccagg 70
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 gatggttccagtgagatatgtttgatattcttggttgtatcattcaaaagttcacccagg 60
Query: 71 aatcaaacatattattactgtgaccctcg 99
|||||||||||||||||||||||||||||
Sbjct: 61 aatcaaacatattattactgtgaccctcg 89
>36938_dps-mir-190:mirbase
Length = 94
Score = 139 bits (70), Expect = 4e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 16 ttccagtgagatatgtttgatattcttggttgtttcattcaaaagttcacccaggaatca 75
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 9 ttccagtgagatatgtttgatattcttggttgttacattcaagagttcacccaggaatca 68
Query: 76 aacatattattactgtga 93
||||||||||||||||||
Sbjct: 69 aacatattattactgtga 86
>36026_cqu-mir-190-1:mirbase
Length = 90
Score = 91.7 bits (46), Expect = 9e-20
Identities = 71/78 (91%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 16 ttccagtgagatatgtttgatattcttggttgtttcattcaaaagt-tcacccaggaatc 74
|||||||||||||||||||||||||||||||||| ||| | | | |||||||||||||
Sbjct: 7 ttccagtgagatatgtttgatattcttggttgttaaattttatattatcacccaggaatc 66
Query: 75 aaacatattattactgtg 92
||||||||||||||||||
Sbjct: 67 aaacatattattactgtg 84
>35197_aae-mir-190:mirbase
Length = 101
Score = 83.8 bits (42), Expect = 2e-17
Identities = 70/78 (89%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 16 ttccagtgagatatgtttgatattcttggttgtttcattcaaaagt-tcacccaggaatc 74
|||| ||||||||||||||||||||||||||||| ||| | | | |||||||||||||
Sbjct: 7 ttccggtgagatatgtttgatattcttggttgttaaattttatattatcacccaggaatc 66
Query: 75 aaacatattattactgtg 92
||||||||||||||||||
Sbjct: 67 aaacatattattactgtg 84
>36027_cqu-mir-190-2:mirbase
Length = 90
Score = 83.8 bits (42), Expect = 2e-17
Identities = 70/78 (89%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 16 ttccagtgagatatgtttgatattcttggttgtttcattcaaaagt-tcacccaggaatc 74
|||| ||||||||||||||||||||||||||||| ||| | | | |||||||||||||
Sbjct: 7 ttccggtgagatatgtttgatattcttggttgttaaattttatattatcacccaggaatc 66
Query: 75 aaacatattattactgtg 92
||||||||||||||||||
Sbjct: 67 aaacatattattactgtg 84
>35294_aga-mir-190:mirbase
Length = 101
Score = 69.9 bits (35), Expect = 3e-13
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 21 gtgagatatgtttgatattcttggttgtt-tcattcaaaagttcacccaggaatcaaaca 79
||||||||||||||||||||||||||||| ||| || ||||||||||||||||||
Sbjct: 21 gtgagatatgtttgatattcttggttgttaagatttcaattatcacccaggaatcaaaca 80
Query: 80 tattattactgtgac 94
||||||||| |||||
Sbjct: 81 tattattaccgtgac 95
>35067_api-mir-190:mirbase
Length = 68
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 21 gtgagatatgtttgatattcttggttgtt 49
|||||||||||||||||||||||||||||
Sbjct: 4 gtgagatatgtttgatattcttggttgtt 32
>35372_ame-mir-190:mirbase
Length = 100
Score = 58.0 bits (29), Expect = 1e-09
Identities = 56/64 (87%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 24 agatatgtttgatattcttggttgtttcattcaaaagttcacccaggaatcaaacatatt 83
||||||||||||||||||||||||||| || ||| || ||||||||||||||||||
Sbjct: 25 agatatgtttgatattcttggttgttt--tttaaagaatcgaccaggaatcaaacatatt 82
Query: 84 atta 87
||||
Sbjct: 83 atta 86
>35542_bmo-mir-190:mirbase
Length = 90
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 23 gagatatgtttgatattcttggttgttt 50
||||||||||||||||||||||||||||
Sbjct: 16 gagatatgtttgatattcttggttgttt 43
>37749_tca-mir-190:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 55/64 (85%), Gaps = 4/64 (6%)
Strand = Plus / Plus
Query: 24 agatatgtttgatattcttggttgtttcattcaaaagttcacccaggaatcaaacatatt 83
||||||||||||||||||||||||| | || | ||||||||||| |||||||||||
Sbjct: 14 agatatgtttgatattcttggttgtattttt----aattcacccaggagtcaaacatatt 69
Query: 84 atta 87
||||
Sbjct: 70 atta 73
>37750_tca-mir-190:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 55/64 (85%), Gaps = 4/64 (6%)
Strand = Plus / Plus
Query: 24 agatatgtttgatattcttggttgtttcattcaaaagttcacccaggaatcaaacatatt 83
||||||||||||||||||||||||| | || | ||||||||||| |||||||||||
Sbjct: 14 agatatgtttgatattcttggttgtattttt----aattcacccaggagtcaaacatatt 69
Query: 84 atta 87
||||
Sbjct: 70 atta 73
>37654_nvi-mir-190:mirbase
Length = 96
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 24 agatatgtttgatattcttggttgt 48
|||||||||||||||||||||||||
Sbjct: 24 agatatgtttgatattcttggttgt 48
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 66 ccaggaatcaaacatattattac 88
|||||||||||||||||||||||
Sbjct: 62 ccaggaatcaaacatattattac 84
