miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36397_dme-mir-193:mirbase
          Length = 108

 Score =  214 bits (108), Expect = 1e-56
 Identities = 108/108 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgtgcccttattatggttgggattttttagatcagcagttattgctatatagccatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tgtgtgcccttattatggttgggattttttagatcagcagttattgctatatagccatat 60

                                                           
Query: 61  ttataaatcttctactggcctactaagtcccaacataatgagagtaaa 108
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttataaatcttctactggcctactaagtcccaacataatgagagtaaa 108




>37226_dsi-mir-193:mirbase
          Length = 120

 Score =  198 bits (100), Expect = 6e-52
 Identities = 106/108 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgtgcccttattatggttgggattttttagatcagcagttattgctatatagccatat 60
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4   tgtgtgcccccattatggttgggattttttagatcagcagttattgctatatagccatat 63

                                                           
Query: 61  ttataaatcttctactggcctactaagtcccaacataatgagagtaaa 108
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  ttataaatcttctactggcctactaagtcccaacataatgagagtaaa 111




>36939_dps-mir-193:mirbase
          Length = 102

 Score =  157 bits (79), Expect = 2e-39
 Identities = 91/95 (95%)
 Strand = Plus / Plus

                                                                       
Query: 12  attatggttgggattttttagatcagcagttattgctatatagccatatttataaatctt 71
           ||||| |||||||||||||||||||||||||||||||||| |||| |||| |||||||||
Sbjct: 8   attatagttgggattttttagatcagcagttattgctatacagccgtattaataaatctt 67

                                              
Query: 72  ctactggcctactaagtcccaacataatgagagta 106
           |||||||||||||||||||||||||||||||||||
Sbjct: 68  ctactggcctactaagtcccaacataatgagagta 102




>35198_aae-mir-193:mirbase
          Length = 124

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 72 ctactggcctactaagtcccaac 94
          |||||||||||||||||||||||
Sbjct: 71 ctactggcctactaagtcccaac 93