miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36404_dme-mir-252:mirbase
          Length = 93

 Score =  184 bits (93), Expect = 7e-48
 Identities = 93/93 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  accaagttcgctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacct 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  accaagttcgctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacct 60

                                           
Query: 61 cctgctgcccaagtgcttattaaagcggcgagt 93
          |||||||||||||||||||||||||||||||||
Sbjct: 61 cctgctgcccaagtgcttattaaagcggcgagt 93




>37229_dsi-mir-252:mirbase
          Length = 116

 Score =  184 bits (93), Expect = 7e-48
 Identities = 93/93 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   accaagttcgctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15  accaagttcgctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacct 74

                                            
Query: 61  cctgctgcccaagtgcttattaaagcggcgagt 93
           |||||||||||||||||||||||||||||||||
Sbjct: 75  cctgctgcccaagtgcttattaaagcggcgagt 107




>36943_dps-mir-252:mirbase
          Length = 110

 Score =  161 bits (81), Expect = 1e-40
 Identities = 81/81 (100%)
 Strand = Plus / Plus

                                                                      
Query: 10 gctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacctcctgctgcc 69
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 gctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacctcctgctgcc 74

                               
Query: 70 caagtgcttattaaagcggcg 90
          |||||||||||||||||||||
Sbjct: 75 caagtgcttattaaagcggcg 95




>37584_ngi-mir-252:mirbase
          Length = 94

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 13 ttcctaagtactagtgccgcaggagt 38
          ||||||||||||||||||||||||||
Sbjct: 13 ttcctaagtactagtgccgcaggagt 38




>37615_nlo-mir-252:mirbase
          Length = 94

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 13 ttcctaagtactagtgccgcaggagt 38
          ||||||||||||||||||||||||||
Sbjct: 13 ttcctaagtactagtgccgcaggagt 38




>37657_nvi-mir-252:mirbase
          Length = 101

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 13 ttcctaagtactagtgccgcaggagt 38
          ||||||||||||||||||||||||||
Sbjct: 13 ttcctaagtactagtgccgcaggagt 38




>35544_bmo-mir-252:mirbase
          Length = 85

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 13 ttcctaagtactagtgccgcaggag 37
          |||||||||||||||||||||||||
Sbjct: 13 ttcctaagtactagtgccgcaggag 37




>34892_sko-mir-252a:mirbase
          Length = 101

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 16 ctaagtactagtgccgcaggagt 38
          |||||||||||||||||||||||
Sbjct: 21 ctaagtactagtgccgcaggagt 43




>35201_aae-mir-252:mirbase
          Length = 71

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 11 ctttcctaagtactagtgccgcaggag 37
          |||| ||||||||||||||||||||||
Sbjct: 6  ctttactaagtactagtgccgcaggag 32



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 61 cctgctgcccaagtgcttat 80
          ||||||||||||||||||||
Sbjct: 44 cctgctgcccaagtgcttat 63




>36029_cqu-mir-252:mirbase
          Length = 71

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 11 ctttcctaagtactagtgccgcaggag 37
          |||| ||||||||||||||||||||||
Sbjct: 6  ctttactaagtactagtgccgcaggag 32



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 61 cctgctgcccaagtgcttat 80
          ||||||||||||||||||||
Sbjct: 44 cctgctgcccaagtgcttat 63




>37758_tca-mir-252a:mirbase
          Length = 87

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 16 ctaagtactagtgccgcaggagt 38
          |||||||||||||||||||||||
Sbjct: 17 ctaagtactagtgccgcaggagt 39



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 57 acctcctgctgcccaagtgcttat 80
          |||||||||||| |||||||||||
Sbjct: 47 acctcctgctgctcaagtgcttat 70




>37757_tca-mir-252a:mirbase
          Length = 87

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 16 ctaagtactagtgccgcaggagt 38
          |||||||||||||||||||||||
Sbjct: 17 ctaagtactagtgccgcaggagt 39



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 57 acctcctgctgcccaagtgcttat 80
          |||||||||||| |||||||||||
Sbjct: 47 acctcctgctgctcaagtgcttat 70




>38768_cte-mir-252a:mirbase
          Length = 101

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 16 ctaagtactagtgccgcaggag 37
          ||||||||||||||||||||||
Sbjct: 21 ctaagtactagtgccgcaggag 42




>35376_ame-mir-252:mirbase
          Length = 100

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 17 taagtactagtgccgcaggagt 38
          ||||||||||||||||||||||
Sbjct: 17 taagtactagtgccgcaggagt 38




>35017_dpu-mir-252a:mirbase
          Length = 100

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 13 ttcctaagtactagtgccgcaggag 37
          |||||||||||| ||||||||||||
Sbjct: 18 ttcctaagtactcgtgccgcaggag 42




>24700_bfl-mir-252a:mirbase
          Length = 101

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 16 ctaagtactagtgccgcagg 35
          ||||||||||||||||||||
Sbjct: 21 ctaagtactagtgccgcagg 40