miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36408_dme-mir-263b:mirbase
Length = 90
Score = 178 bits (90), Expect = 4e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 ttgctgactttgagtcttggcactgggagaattcacagttgactttattattctgtggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgctgactttgagtcttggcactgggagaattcacagttgactttattattctgtggtt 60
Query: 61 ctgcgggtgccaaaacttaaaaaccggctt 90
||||||||||||||||||||||||||||||
Sbjct: 61 ctgcgggtgccaaaacttaaaaaccggctt 90
>37152_dse-mir-263b:mirbase
Length = 90
Score = 170 bits (86), Expect = 1e-43
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 1 ttgctgactttgagtcttggcactgggagaattcacagttgactttattattctgtggtt 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 ttgctgactttgagtcttggcactgggagaattcacagttgacttgattattctgtggtt 60
Query: 61 ctgcgggtgccaaaacttaaaaaccggctt 90
||||||||||||||||||||||||||||||
Sbjct: 61 ctgcgggtgccaaaacttaaaaaccggctt 90
>37231_dsi-mir-263b:mirbase
Length = 90
Score = 170 bits (86), Expect = 1e-43
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 1 ttgctgactttgagtcttggcactgggagaattcacagttgactttattattctgtggtt 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 ttgctgactttgagtcttggcactgggagaattcacagttgacttgattattctgtggtt 60
Query: 61 ctgcgggtgccaaaacttaaaaaccggctt 90
||||||||||||||||||||||||||||||
Sbjct: 61 ctgcgggtgccaaaacttaaaaaccggctt 90
>37520_dya-mir-263b-1:mirbase
Length = 88
Score = 149 bits (75), Expect = 4e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 2 tgctgactttgagtcttggcactgggagaattcacagttgactttattattctgtggttc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgctgactttgagtcttggcactgggagaattcacagttgactttattattctgtggttc 60
Query: 62 tgcgggtgccaaaacttaa 80
|||||||||||||| ||||
Sbjct: 61 tgcgggtgccaaaatttaa 79
>37521_dya-mir-263b-2:mirbase
Length = 88
Score = 149 bits (75), Expect = 4e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 2 tgctgactttgagtcttggcactgggagaattcacagttgactttattattctgtggttc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgctgactttgagtcttggcactgggagaattcacagttgactttattattctgtggttc 60
Query: 62 tgcgggtgccaaaacttaa 80
|||||||||||||| ||||
Sbjct: 61 tgcgggtgccaaaatttaa 79
>36192_der-mir-263b:mirbase
Length = 89
Score = 139 bits (70), Expect = 4e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 3 gctgactttgagtcttggcactgggagaattcacagttgactttattattctgtggttct 62
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 3 gctgactttgagtcttggcactgggagaattcacagttgattttattattctgtggttct 62
Query: 63 gcgggtgccaaaacttaa 80
||||||||||||| ||||
Sbjct: 63 gcgggtgccaaaatttaa 80
>36114_dan-mir-263b:mirbase
Length = 89
Score = 123 bits (62), Expect = 2e-29
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 2 tgctgactttgagtcttggcactgggagaattcacagttgactttattattctgtggttc 61
||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 tgctgtctttgaatcttggcactgggagaattcacagttgattttattattctgtggttc 60
Query: 62 tgcgggtgccaaaa 75
||||||||||||||
Sbjct: 61 tgcgggtgccaaaa 74
>36281_dgr-mir-263b:mirbase
Length = 75
Score = 77.8 bits (39), Expect = 1e-15
Identities = 57/62 (91%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 15 tcttggcactgggagaattcacagttgactttat--tattctgtggttctgcgggtgcca 72
||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct: 8 tcttggcactgggagaattcacagttggttatataatattctgtggttctgcgggtgcca 67
Query: 73 aa 74
||
Sbjct: 68 aa 69
>37445_dwi-mir-263b:mirbase
Length = 70
Score = 73.8 bits (37), Expect = 2e-14
Identities = 60/66 (90%), Gaps = 5/66 (7%)
Strand = Plus / Plus
Query: 15 tcttggcactgggagaattcacagttgact-ttat----tattctgtggttctgcgggtg 69
|||||||||||||||||||||||||||| | |||| |||||||||||||||||||||
Sbjct: 2 tcttggcactgggagaattcacagttgattcttattcgatattctgtggttctgcgggtg 61
Query: 70 ccaaaa 75
||||||
Sbjct: 62 ccaaaa 67
>37366_dvi-mir-263b:mirbase
Length = 71
Score = 71.9 bits (36), Expect = 7e-14
Identities = 57/63 (90%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 15 tcttggcactgggagaattcacagttgactttat--tattctgtggttctgcgggtgcca 72
||||||||||||||||||||||||| || | || ||||||||||||||||||||||||
Sbjct: 5 tcttggcactgggagaattcacagtcgattacataatattctgtggttctgcgggtgcca 64
Query: 73 aaa 75
|||
Sbjct: 65 aaa 67
>36866_dpe-mir-263b:mirbase
Length = 92
Score = 69.9 bits (35), Expect = 3e-13
Identities = 55/59 (93%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 15 tcttggcactgggagaattcacagttgacttt-at-tattctgtggttctgcgggtgcc 71
||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||
Sbjct: 15 tcttggcactgggagaattcacagttggttttcatatattctgtggttctgcgggtgcc 73
>36945_dps-mir-263b:mirbase
Length = 91
Score = 69.9 bits (35), Expect = 3e-13
Identities = 58/63 (92%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 15 tcttggcactgggagaattcacagttgactt-tat-tattctgtggttctgcgggtgcca 72
||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 15 tcttggcactgggagaattcacagttggtttccatatattctgtggttctgcgggtgcca 74
Query: 73 aaa 75
|||
Sbjct: 75 aaa 77
>35298_aga-mir-263b:mirbase
Length = 96
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 cttggcactgggagaattcacagt 39
||||||||||||||||||||||||
Sbjct: 16 cttggcactgggagaattcacagt 39
>35203_aae-mir-263b:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 cttggcactgggagaattcacag 38
|||||||||||||||||||||||
Sbjct: 15 cttggcactgggagaattcacag 37
>35546_bmo-mir-263b:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 cttggcactgggagaattcacag 38
|||||||||||||||||||||||
Sbjct: 15 cttggcactgggagaattcacag 37
>35378_ame-mir-263b:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 gtcttggcactgggagaattcacag 38
||||||||||||| |||||||||||
Sbjct: 14 gtcttggcactggaagaattcacag 38
>37585_ngi-mir-263b:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 gtcttggcactgggagaattcacag 38
||||||||||||| |||||||||||
Sbjct: 13 gtcttggcactggaagaattcacag 37
>37616_nlo-mir-263b:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 gtcttggcactgggagaattcacag 38
||||||||||||| |||||||||||
Sbjct: 13 gtcttggcactggaagaattcacag 37
>37658_nvi-mir-263b:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 gtcttggcactgggagaattcacag 38
||||||||||||| |||||||||||
Sbjct: 8 gtcttggcactggaagaattcacag 32
