miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36418_dme-mir-277:mirbase
          Length = 100

 Score =  198 bits (100), Expect = 5e-52
 Identities = 100/100 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgaaggttttgggctgcgtgtcaggagtgcatttgcactgaaactatctgaagcatgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ttgaaggttttgggctgcgtgtcaggagtgcatttgcactgaaactatctgaagcatgta 60

                                                   
Query: 61  aatgcactatctggtacgacattccagaacgtacaatctt 100
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aatgcactatctggtacgacattccagaacgtacaatctt 100




>36197_der-mir-277:mirbase
          Length = 98

 Score =  194 bits (98), Expect = 8e-51
 Identities = 98/98 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttgaaggttttgggctgcgtgtcaggagtgcatttgcactgaaactatctgaagcatgta 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ttgaaggttttgggctgcgtgtcaggagtgcatttgcactgaaactatctgaagcatgta 60

                                                
Query: 61 aatgcactatctggtacgacattccagaacgtacaatc 98
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatgcactatctggtacgacattccagaacgtacaatc 98




>37157_dse-mir-277:mirbase
          Length = 98

 Score =  194 bits (98), Expect = 8e-51
 Identities = 98/98 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttgaaggttttgggctgcgtgtcaggagtgcatttgcactgaaactatctgaagcatgta 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ttgaaggttttgggctgcgtgtcaggagtgcatttgcactgaaactatctgaagcatgta 60

                                                
Query: 61 aatgcactatctggtacgacattccagaacgtacaatc 98
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatgcactatctggtacgacattccagaacgtacaatc 98




>37526_dya-mir-277:mirbase
          Length = 98

 Score =  194 bits (98), Expect = 8e-51
 Identities = 98/98 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttgaaggttttgggctgcgtgtcaggagtgcatttgcactgaaactatctgaagcatgta 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ttgaaggttttgggctgcgtgtcaggagtgcatttgcactgaaactatctgaagcatgta 60

                                                
Query: 61 aatgcactatctggtacgacattccagaacgtacaatc 98
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatgcactatctggtacgacattccagaacgtacaatc 98




>36119_dan-mir-277:mirbase
          Length = 98

 Score =  170 bits (86), Expect = 1e-43
 Identities = 95/98 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttgaaggttttgggctgcgtgtcaggagtgcatttgcactgaaactatctgaagcatgta 60
          |||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||
Sbjct: 1  ttgaaggttttgggctgcgtgtcaggagtgcatttgcactgaaacattctgaagcttgta 60

                                                
Query: 61 aatgcactatctggtacgacattccagaacgtacaatc 98
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatgcactatctggtacgacattccagaacgtacaatc 98




>36951_dps-mir-277:mirbase
          Length = 100

 Score =  167 bits (84), Expect = 2e-42
 Identities = 96/100 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgaaggttttgggctgcgtgtcaggagtgcatttgcactgaaactatctgaagcatgta 60
           |||||||||||||| ||||||||||||||||||||||||||||||  |||||||| ||||
Sbjct: 1   ttgaaggttttgggttgcgtgtcaggagtgcatttgcactgaaacattctgaagcttgta 60

                                                   
Query: 61  aatgcactatctggtacgacattccagaacgtacaatctt 100
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aatgcactatctggtacgacattccagaacgtacaatctt 100




>36871_dpe-mir-277:mirbase
          Length = 98

 Score =  163 bits (82), Expect = 3e-41
 Identities = 94/98 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttgaaggttttgggctgcgtgtcaggagtgcatttgcactgaaactatctgaagcatgta 60
          |||||||||||||| ||||||||||||||||||||||||||||||  |||||||| ||||
Sbjct: 1  ttgaaggttttgggttgcgtgtcaggagtgcatttgcactgaaacattctgaagcttgta 60

                                                
Query: 61 aatgcactatctggtacgacattccagaacgtacaatc 98
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatgcactatctggtacgacattccagaacgtacaatc 98




>37235_dsi-mir-277:mirbase
          Length = 98

 Score =  163 bits (82), Expect = 3e-41
 Identities = 94/98 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttgaaggttttgggctgcgtgtcaggagtgcatttgcactgaaactatctgaagcatgta 60
          |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 1  ttgaaggttttgggctgcgtgtcaggagtgcatttgcactgaaactatccaaagcatgta 60

                                                
Query: 61 aatgcactatctggtacgacattccagaacgtacaatc 98
          |||||| ||| |||||||||||||||||||||||||||
Sbjct: 61 aatgcattatttggtacgacattccagaacgtacaatc 98




>37450_dwi-mir-277:mirbase
          Length = 99

 Score =  149 bits (75), Expect = 4e-37
 Identities = 94/99 (94%), Gaps = 1/99 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttgaaggttttgggctgcgtgtcaggagtgcatttgcactgaaactatct-gaagcatgt 59
          |||||||||||||||||||||||||||||||||||||||||||| | |||  |||| |||
Sbjct: 1  ttgaaggttttgggctgcgtgtcaggagtgcatttgcactgaaaatttctaaaagcttgt 60

                                                 
Query: 60 aaatgcactatctggtacgacattccagaacgtacaatc 98
          |||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaatgcactatctggtacgacattccagaacgtacaatc 99




>36794_dmo-mir-277:mirbase
          Length = 88

 Score =  147 bits (74), Expect = 2e-36
 Identities = 83/86 (96%)
 Strand = Plus / Plus

                                                                      
Query: 7  gttttgggctgcgtgtcaggagtgcatttgcactgaaactatctgaagcatgtaaatgca 66
          |||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||
Sbjct: 3  gttttgggctgcgtgtcaggagtgcatttgcactgaaacattctgaagcttgtaaatgca 62

                                    
Query: 67 ctatctggtacgacattccagaacgt 92
          ||||||||||||||||||||||||||
Sbjct: 63 ctatctggtacgacattccagaacgt 88




>36286_dgr-mir-277:mirbase
          Length = 89

 Score =  133 bits (67), Expect = 3e-32
 Identities = 83/87 (95%), Gaps = 1/87 (1%)
 Strand = Plus / Plus

                                                                      
Query: 7  gttttgggctgcgtgtcaggagtgcatttgcactgaaactatctg-aagcatgtaaatgc 65
          |||||||||||||||||||||||||||||||||||||||  |||| |||| |||||||||
Sbjct: 3  gttttgggctgcgtgtcaggagtgcatttgcactgaaacattctgaaagcttgtaaatgc 62

                                     
Query: 66 actatctggtacgacattccagaacgt 92
          |||||||||||||||||||||||||||
Sbjct: 63 actatctggtacgacattccagaacgt 89




>37371_dvi-mir-277:mirbase
          Length = 89

 Score =  133 bits (67), Expect = 3e-32
 Identities = 83/87 (95%), Gaps = 1/87 (1%)
 Strand = Plus / Plus

                                                                      
Query: 7  gttttgggctgcgtgtcaggagtgcatttgcactgaaactatctg-aagcatgtaaatgc 65
          |||||||||||||||||||||||||||||||||||||||  |||| |||| |||||||||
Sbjct: 3  gttttgggctgcgtgtcaggagtgcatttgcactgaaacattctgaaagcttgtaaatgc 62

                                     
Query: 66 actatctggtacgacattccagaacgt 92
          |||||||||||||||||||||||||||
Sbjct: 63 actatctggtacgacattccagaacgt 89




>35207_aae-mir-277:mirbase
          Length = 95

 Score = 65.9 bits (33), Expect = 5e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 57 tgtaaatgcactatctggtacgacattccagaa 89
          |||||||||||||||||||||||||||||||||
Sbjct: 60 tgtaaatgcactatctggtacgacattccagaa 92




>35302_aga-mir-277:mirbase
          Length = 90

 Score = 65.9 bits (33), Expect = 5e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 57 tgtaaatgcactatctggtacgacattccagaa 89
          |||||||||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacattccagaa 89




>36035_cqu-mir-277:mirbase
          Length = 96

 Score = 65.9 bits (33), Expect = 5e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 57 tgtaaatgcactatctggtacgacattccagaa 89
          |||||||||||||||||||||||||||||||||
Sbjct: 61 tgtaaatgcactatctggtacgacattccagaa 93




>35077_api-mir-277:mirbase
          Length = 79

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 55 catgtaaatgcactatctggtacgaca 81
          |||||||||||||||||||||||||||
Sbjct: 53 catgtaaatgcactatctggtacgaca 79




>35381_ame-mir-277:mirbase
          Length = 84

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 57 tgtaaatgcactatctggtacgacat 82
          ||||||||||||||||||||||||||
Sbjct: 49 tgtaaatgcactatctggtacgacat 74




>35550_bmo-mir-277:mirbase
          Length = 122

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 57  tgtaaatgcactatctggtacgacat 82
           ||||||||||||||||||||||||||
Sbjct: 79  tgtaaatgcactatctggtacgacat 104




>37588_ngi-mir-277:mirbase
          Length = 85

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 57 tgtaaatgcactatctggtacgacat 82
          ||||||||||||||||||||||||||
Sbjct: 52 tgtaaatgcactatctggtacgacat 77




>37619_nlo-mir-277:mirbase
          Length = 85

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 57 tgtaaatgcactatctggtacgacat 82
          ||||||||||||||||||||||||||
Sbjct: 52 tgtaaatgcactatctggtacgacat 77




>37661_nvi-mir-277:mirbase
          Length = 87

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 57 tgtaaatgcactatctggtacgacat 82
          ||||||||||||||||||||||||||
Sbjct: 52 tgtaaatgcactatctggtacgacat 77




>37769_tca-mir-277:mirbase
          Length = 81

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 57 tgtaaatgcactatctggtacgaca 81
          |||||||||||||||||||||||||
Sbjct: 51 tgtaaatgcactatctggtacgaca 75




>37770_tca-mir-277:mirbase
          Length = 81

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 57 tgtaaatgcactatctggtacgaca 81
          |||||||||||||||||||||||||
Sbjct: 51 tgtaaatgcactatctggtacgaca 75