miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36420_dme-mir-278:mirbase
Length = 98
Score = 194 bits (98), Expect = 8e-51
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcatttaaacgggtcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcatttaaacgggtcgg 60
Query: 61 tgggactttcgtccgtttgtaacgccatttgtcaacga 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccatttgtcaacga 98
>36198_der-mir-278:mirbase
Length = 91
Score = 172 bits (87), Expect = 3e-44
Identities = 90/91 (98%)
Strand = Plus / Plus
Query: 1 gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcatttaaacgggtcgg 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcctttaaacgggtcgg 60
Query: 61 tgggactttcgtccgtttgtaacgccatttg 91
|||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccatttg 91
>37158_dse-mir-278:mirbase
Length = 91
Score = 172 bits (87), Expect = 3e-44
Identities = 90/91 (98%)
Strand = Plus / Plus
Query: 1 gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcatttaaacgggtcgg 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcctttaaacgggtcgg 60
Query: 61 tgggactttcgtccgtttgtaacgccatttg 91
|||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccatttg 91
>37236_dsi-mir-278:mirbase
Length = 91
Score = 172 bits (87), Expect = 3e-44
Identities = 90/91 (98%)
Strand = Plus / Plus
Query: 1 gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcatttaaacgggtcgg 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcctttaaacgggtcgg 60
Query: 61 tgggactttcgtccgtttgtaacgccatttg 91
|||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccatttg 91
>37527_dya-mir-278:mirbase
Length = 91
Score = 172 bits (87), Expect = 3e-44
Identities = 90/91 (98%)
Strand = Plus / Plus
Query: 1 gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcatttaaacgggtcgg 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcctttaaacgggtcgg 60
Query: 61 tgggactttcgtccgtttgtaacgccatttg 91
|||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccatttg 91
>36120_dan-mir-278:mirbase
Length = 91
Score = 157 bits (79), Expect = 2e-39
Identities = 88/91 (96%)
Strand = Plus / Plus
Query: 1 gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcatttaaacgggtcgg 60
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 1 gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtccttcgaacgggtcgg 60
Query: 61 tgggactttcgtccgtttgtaacgccatttg 91
|||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccatttg 91
>36952_dps-mir-278:mirbase
Length = 98
Score = 155 bits (78), Expect = 7e-39
Identities = 90/94 (95%)
Strand = Plus / Plus
Query: 1 gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcatttaaacgggtcgg 60
|||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||
Sbjct: 1 gtaatggtacggtgcgaccggacgatggttcacaacgaccgtgtctcttaaactggtcgg 60
Query: 61 tgggactttcgtccgtttgtaacgccatttgtca 94
||||||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccatttgtca 94
>36872_dpe-mir-278:mirbase
Length = 91
Score = 149 bits (75), Expect = 4e-37
Identities = 87/91 (95%)
Strand = Plus / Plus
Query: 1 gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcatttaaacgggtcgg 60
|||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||
Sbjct: 1 gtaatggtacggtgcgaccggacgatggttcacaacgaccgtgtctcttaaactggtcgg 60
Query: 61 tgggactttcgtccgtttgtaacgccatttg 91
|||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccatttg 91
>37451_dwi-mir-278:mirbase
Length = 91
Score = 141 bits (71), Expect = 1e-34
Identities = 86/91 (94%)
Strand = Plus / Plus
Query: 1 gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcatttaaacgggtcgg 60
||||||||||||||||||||||||| |||||||||||||||||||| || || ||||||
Sbjct: 1 gtaatggtacggtgcgaccggatgacggttcacaacgaccgtgtcaattttactggtcgg 60
Query: 61 tgggactttcgtccgtttgtaacgccatttg 91
|||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccatttg 91
>36795_dmo-mir-278:mirbase
Length = 92
Score = 127 bits (64), Expect = 2e-30
Identities = 84/90 (93%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 4 atggtacggtgcgaccggatgatggttcacaacgaccgt---gtcatttaaacgggtcgg 60
||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||
Sbjct: 3 atggtacggtgcgaccggatgatggttcacaacgaccgtacagttttttcaacgggtcgg 62
Query: 61 tgggactttcgtccgtttgtaacgccattt 90
||||||||||||||||||||||||||||||
Sbjct: 63 tgggactttcgtccgtttgtaacgccattt 92
>37372_dvi-mir-278:mirbase
Length = 91
Score = 123 bits (62), Expect = 2e-29
Identities = 83/89 (93%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 4 atggtacggtgcgaccggatgatggttcacaacgaccgtg--tcatttaaacgggtcggt 61
|||||||||||||||||||||||||||||||||||||||| | ||| ||| |||||||
Sbjct: 3 atggtacggtgcgaccggatgatggttcacaacgaccgtgcatacttttaactggtcggt 62
Query: 62 gggactttcgtccgtttgtaacgccattt 90
|||||||||||||||||||||||||||||
Sbjct: 63 gggactttcgtccgtttgtaacgccattt 91
>36287_dgr-mir-278:mirbase
Length = 92
Score = 117 bits (59), Expect = 2e-27
Identities = 83/90 (92%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 4 atggtacggtgcgaccggatgatggttcacaacgaccgtg--tcatttaaacgggtcggt 61
|||||||||||||||||||||| ||||||||||||||||| | ||| ||| |||||||
Sbjct: 3 atggtacggtgcgaccggatgacggttcacaacgaccgtgcttatttttaactggtcggt 62
Query: 62 gggactttcgtccgtttgtaacgccatttg 91
||||||||||||||||||||||||||||||
Sbjct: 63 gggactttcgtccgtttgtaacgccatttg 92
>36036_cqu-mir-278:mirbase
Length = 105
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 54 gggtcggtgggactttcgtccgtttgtaac 83
||||||||||||||||||||||||||||||
Sbjct: 64 gggtcggtgggactttcgtccgtttgtaac 93
>35208_aae-mir-278:mirbase
Length = 81
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 55 ggtcggtgggactttcgtccgtttgtaac 83
|||||||||||||||||||||||||||||
Sbjct: 49 ggtcggtgggactttcgtccgtttgtaac 77
>35303_aga-mir-278:mirbase
Length = 83
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 55 ggtcggtgggactttcgtccgtttgtaa 82
||||||||||||||||||||||||||||
Sbjct: 52 ggtcggtgggactttcgtccgtttgtaa 79
>35382_ame-mir-278:mirbase
Length = 92
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 ggtcggtgggactttcgtccgtttg 79
|||||||||||||||||||||||||
Sbjct: 55 ggtcggtgggactttcgtccgtttg 79
>35023_dpu-mir-278:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 50 aaacgggtcggtgggactttcgtccgt 76
|||| ||||||||||||||||||||||
Sbjct: 54 aaacaggtcggtgggactttcgtccgt 80
>34981_isc-mir-278:mirbase
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55 ggtcggtgggactttcgtccgttt 78
||||||||||| ||||||||||||
Sbjct: 66 ggtcggtgggattttcgtccgttt 89
>35078_api-mir-278:mirbase
Length = 66
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55 ggtcggtgggactttcgtccgttt 78
|||||||||||||||||| |||||
Sbjct: 43 ggtcggtgggactttcgttcgttt 66
>35551_bmo-mir-278:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 54 gggtcggtgggactttcgtccgtttgta 81
|||||||||||| ||||||||||||||
Sbjct: 50 gggtcggtgggatcttcgtccgtttgta 77
