miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36419_dme-mir-278:mirbase
          Length = 98

 Score =  194 bits (98), Expect = 8e-51
 Identities = 98/98 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcatttaaacgggtcgg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcatttaaacgggtcgg 60

                                                
Query: 61 tgggactttcgtccgtttgtaacgccatttgtcaacga 98
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccatttgtcaacga 98




>36198_der-mir-278:mirbase
          Length = 91

 Score =  172 bits (87), Expect = 3e-44
 Identities = 90/91 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcatttaaacgggtcgg 60
          ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1  gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcctttaaacgggtcgg 60

                                         
Query: 61 tgggactttcgtccgtttgtaacgccatttg 91
          |||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccatttg 91




>37158_dse-mir-278:mirbase
          Length = 91

 Score =  172 bits (87), Expect = 3e-44
 Identities = 90/91 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcatttaaacgggtcgg 60
          ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1  gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcctttaaacgggtcgg 60

                                         
Query: 61 tgggactttcgtccgtttgtaacgccatttg 91
          |||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccatttg 91




>37236_dsi-mir-278:mirbase
          Length = 91

 Score =  172 bits (87), Expect = 3e-44
 Identities = 90/91 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcatttaaacgggtcgg 60
          ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1  gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcctttaaacgggtcgg 60

                                         
Query: 61 tgggactttcgtccgtttgtaacgccatttg 91
          |||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccatttg 91




>37527_dya-mir-278:mirbase
          Length = 91

 Score =  172 bits (87), Expect = 3e-44
 Identities = 90/91 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcatttaaacgggtcgg 60
          ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1  gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcctttaaacgggtcgg 60

                                         
Query: 61 tgggactttcgtccgtttgtaacgccatttg 91
          |||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccatttg 91




>36120_dan-mir-278:mirbase
          Length = 91

 Score =  157 bits (79), Expect = 2e-39
 Identities = 88/91 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcatttaaacgggtcgg 60
          ||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||
Sbjct: 1  gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtccttcgaacgggtcgg 60

                                         
Query: 61 tgggactttcgtccgtttgtaacgccatttg 91
          |||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccatttg 91




>36952_dps-mir-278:mirbase
          Length = 98

 Score =  155 bits (78), Expect = 7e-39
 Identities = 90/94 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcatttaaacgggtcgg 60
          |||||||||||||||||||||| ||||||||||||||||||||||  |||||| ||||||
Sbjct: 1  gtaatggtacggtgcgaccggacgatggttcacaacgaccgtgtctcttaaactggtcgg 60

                                            
Query: 61 tgggactttcgtccgtttgtaacgccatttgtca 94
          ||||||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccatttgtca 94




>36872_dpe-mir-278:mirbase
          Length = 91

 Score =  149 bits (75), Expect = 4e-37
 Identities = 87/91 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcatttaaacgggtcgg 60
          |||||||||||||||||||||| ||||||||||||||||||||||  |||||| ||||||
Sbjct: 1  gtaatggtacggtgcgaccggacgatggttcacaacgaccgtgtctcttaaactggtcgg 60

                                         
Query: 61 tgggactttcgtccgtttgtaacgccatttg 91
          |||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccatttg 91




>37451_dwi-mir-278:mirbase
          Length = 91

 Score =  141 bits (71), Expect = 1e-34
 Identities = 86/91 (94%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtaatggtacggtgcgaccggatgatggttcacaacgaccgtgtcatttaaacgggtcgg 60
          ||||||||||||||||||||||||| |||||||||||||||||||| ||  || ||||||
Sbjct: 1  gtaatggtacggtgcgaccggatgacggttcacaacgaccgtgtcaattttactggtcgg 60

                                         
Query: 61 tgggactttcgtccgtttgtaacgccatttg 91
          |||||||||||||||||||||||||||||||
Sbjct: 61 tgggactttcgtccgtttgtaacgccatttg 91




>36795_dmo-mir-278:mirbase
          Length = 92

 Score =  127 bits (64), Expect = 2e-30
 Identities = 84/90 (93%), Gaps = 3/90 (3%)
 Strand = Plus / Plus

                                                                      
Query: 4  atggtacggtgcgaccggatgatggttcacaacgaccgt---gtcatttaaacgggtcgg 60
          |||||||||||||||||||||||||||||||||||||||   ||  ||| ||||||||||
Sbjct: 3  atggtacggtgcgaccggatgatggttcacaacgaccgtacagttttttcaacgggtcgg 62

                                        
Query: 61 tgggactttcgtccgtttgtaacgccattt 90
          ||||||||||||||||||||||||||||||
Sbjct: 63 tgggactttcgtccgtttgtaacgccattt 92




>37372_dvi-mir-278:mirbase
          Length = 91

 Score =  123 bits (62), Expect = 2e-29
 Identities = 83/89 (93%), Gaps = 2/89 (2%)
 Strand = Plus / Plus

                                                                      
Query: 4  atggtacggtgcgaccggatgatggttcacaacgaccgtg--tcatttaaacgggtcggt 61
          ||||||||||||||||||||||||||||||||||||||||  |  ||| ||| |||||||
Sbjct: 3  atggtacggtgcgaccggatgatggttcacaacgaccgtgcatacttttaactggtcggt 62

                                       
Query: 62 gggactttcgtccgtttgtaacgccattt 90
          |||||||||||||||||||||||||||||
Sbjct: 63 gggactttcgtccgtttgtaacgccattt 91




>36287_dgr-mir-278:mirbase
          Length = 92

 Score =  117 bits (59), Expect = 2e-27
 Identities = 83/90 (92%), Gaps = 2/90 (2%)
 Strand = Plus / Plus

                                                                      
Query: 4  atggtacggtgcgaccggatgatggttcacaacgaccgtg--tcatttaaacgggtcggt 61
          |||||||||||||||||||||| |||||||||||||||||  |  ||| ||| |||||||
Sbjct: 3  atggtacggtgcgaccggatgacggttcacaacgaccgtgcttatttttaactggtcggt 62

                                        
Query: 62 gggactttcgtccgtttgtaacgccatttg 91
          ||||||||||||||||||||||||||||||
Sbjct: 63 gggactttcgtccgtttgtaacgccatttg 92




>36036_cqu-mir-278:mirbase
          Length = 105

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 54 gggtcggtgggactttcgtccgtttgtaac 83
          ||||||||||||||||||||||||||||||
Sbjct: 64 gggtcggtgggactttcgtccgtttgtaac 93




>35208_aae-mir-278:mirbase
          Length = 81

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 55 ggtcggtgggactttcgtccgtttgtaac 83
          |||||||||||||||||||||||||||||
Sbjct: 49 ggtcggtgggactttcgtccgtttgtaac 77




>35303_aga-mir-278:mirbase
          Length = 83

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 55 ggtcggtgggactttcgtccgtttgtaa 82
          ||||||||||||||||||||||||||||
Sbjct: 52 ggtcggtgggactttcgtccgtttgtaa 79




>35382_ame-mir-278:mirbase
          Length = 92

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 55 ggtcggtgggactttcgtccgtttg 79
          |||||||||||||||||||||||||
Sbjct: 55 ggtcggtgggactttcgtccgtttg 79




>35023_dpu-mir-278:mirbase
          Length = 101

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 50 aaacgggtcggtgggactttcgtccgt 76
          |||| ||||||||||||||||||||||
Sbjct: 54 aaacaggtcggtgggactttcgtccgt 80




>34981_isc-mir-278:mirbase
          Length = 103

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 55 ggtcggtgggactttcgtccgttt 78
          ||||||||||| ||||||||||||
Sbjct: 66 ggtcggtgggattttcgtccgttt 89




>35078_api-mir-278:mirbase
          Length = 66

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 55 ggtcggtgggactttcgtccgttt 78
          |||||||||||||||||| |||||
Sbjct: 43 ggtcggtgggactttcgttcgttt 66




>35551_bmo-mir-278:mirbase
          Length = 87

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 54 gggtcggtgggactttcgtccgtttgta 81
          ||||||||||||  ||||||||||||||
Sbjct: 50 gggtcggtgggatcttcgtccgtttgta 77