miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36421_dme-mir-279:mirbase
          Length = 100

 Score =  198 bits (100), Expect = 5e-52
 Identities = 100/100 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaattcatactactgtttttagtgggtgggggtccagtgtttcacattgattttcttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggaattcatactactgtttttagtgggtgggggtccagtgtttcacattgattttcttag 60

                                                   
Query: 61  tatttgtgactagatccacactcattaataacggtagttc 100
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tatttgtgactagatccacactcattaataacggtagttc 100




>36199_der-mir-279:mirbase
          Length = 93

 Score =  184 bits (93), Expect = 8e-48
 Identities = 93/93 (100%)
 Strand = Plus / Plus

                                                                       
Query: 8   atactactgtttttagtgggtgggggtccagtgtttcacattgattttcttagtatttgt 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atactactgtttttagtgggtgggggtccagtgtttcacattgattttcttagtatttgt 60

                                            
Query: 68  gactagatccacactcattaataacggtagttc 100
           |||||||||||||||||||||||||||||||||
Sbjct: 61  gactagatccacactcattaataacggtagttc 93




>37159_dse-mir-279:mirbase
          Length = 93

 Score =  176 bits (89), Expect = 2e-45
 Identities = 92/93 (98%)
 Strand = Plus / Plus

                                                                       
Query: 8   atactactgtttttagtgggtgggggtccagtgtttcacattgattttcttagtatttgt 67
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atactgctgtttttagtgggtgggggtccagtgtttcacattgattttcttagtatttgt 60

                                            
Query: 68  gactagatccacactcattaataacggtagttc 100
           |||||||||||||||||||||||||||||||||
Sbjct: 61  gactagatccacactcattaataacggtagttc 93




>37237_dsi-mir-279:mirbase
          Length = 93

 Score =  176 bits (89), Expect = 2e-45
 Identities = 92/93 (98%)
 Strand = Plus / Plus

                                                                       
Query: 8   atactactgtttttagtgggtgggggtccagtgtttcacattgattttcttagtatttgt 67
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atactgctgtttttagtgggtgggggtccagtgtttcacattgattttcttagtatttgt 60

                                            
Query: 68  gactagatccacactcattaataacggtagttc 100
           |||||||||||||||||||||||||||||||||
Sbjct: 61  gactagatccacactcattaataacggtagttc 93




>36953_dps-mir-279:mirbase
          Length = 95

 Score =  172 bits (87), Expect = 3e-44
 Identities = 93/95 (97%)
 Strand = Plus / Plus

                                                                       
Query: 6   tcatactactgtttttagtgggtgggggtccagtgtttcacattgattttcttagtattt 65
           |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 1   tcatactactgtttttagtgagtgagggtccagtgtttcacattgattttcttagtattt 60

                                              
Query: 66  gtgactagatccacactcattaataacggtagttc 100
           |||||||||||||||||||||||||||||||||||
Sbjct: 61  gtgactagatccacactcattaataacggtagttc 95




>36873_dpe-mir-279:mirbase
          Length = 93

 Score =  168 bits (85), Expect = 5e-43
 Identities = 91/93 (97%)
 Strand = Plus / Plus

                                                                       
Query: 8   atactactgtttttagtgggtgggggtccagtgtttcacattgattttcttagtatttgt 67
           |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1   atactactgtttttagtgagtgagggtccagtgtttcacattgattttcttagtatttgt 60

                                            
Query: 68  gactagatccacactcattaataacggtagttc 100
           |||||||||||||||||||||||||||||||||
Sbjct: 61  gactagatccacactcattaataacggtagttc 93




>37528_dya-mir-279:mirbase
          Length = 93

 Score =  168 bits (85), Expect = 5e-43
 Identities = 91/93 (97%)
 Strand = Plus / Plus

                                                                       
Query: 8   atactactgtttttagtgggtgggggtccagtgtttcacattgattttcttagtatttgt 67
           |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 1   atactactgtttttagtgggtgagggtccagtgcttcacattgattttcttagtatttgt 60

                                            
Query: 68  gactagatccacactcattaataacggtagttc 100
           |||||||||||||||||||||||||||||||||
Sbjct: 61  gactagatccacactcattaataacggtagttc 93




>36121_dan-mir-279:mirbase
          Length = 89

 Score =  137 bits (69), Expect = 2e-33
 Identities = 88/92 (95%), Gaps = 3/92 (3%)
 Strand = Plus / Plus

                                                                       
Query: 9   tactactgtttttagtgggtgggggtccagtgtttcacattgattttcttagtatttgtg 68
           ||||||||||||||||||||| ||||||||||||||||||||| |||||  |||||||||
Sbjct: 1   tactactgtttttagtgggtgagggtccagtgtttcacattga-tttct--gtatttgtg 57

                                           
Query: 69  actagatccacactcattaataacggtagttc 100
           ||||||||||||||||||||||||||||||||
Sbjct: 58  actagatccacactcattaataacggtagttc 89




>37452_dwi-mir-279:mirbase
          Length = 91

 Score =  127 bits (64), Expect = 2e-30
 Identities = 86/92 (93%), Gaps = 1/92 (1%)
 Strand = Plus / Plus

                                                                       
Query: 9   tactactgtttttagtgggtgggggtccagtgtttcacattgattttcttagtatttgtg 68
           ||||||||||||||||| ||| ||||||||||||||||||| | | | ||||||||||||
Sbjct: 1   tactactgtttttagtgagtgagggtccagtgtttcacattaaatat-ttagtatttgtg 59

                                           
Query: 69  actagatccacactcattaataacggtagttc 100
           ||||||||||||||||||||||||||||||||
Sbjct: 60  actagatccacactcattaataacggtagttc 91




>36288_dgr-mir-279:mirbase
          Length = 91

 Score =  123 bits (62), Expect = 3e-29
 Identities = 83/89 (93%), Gaps = 2/89 (2%)
 Strand = Plus / Plus

                                                                       
Query: 12  tactgtttttagtgggtgggggtccagtgtttcacattgattttcttagtatttgtgact 71
           |||||||||||||||||| ||||||||||||||||||||  ||| || ||||||||||||
Sbjct: 5   tactgtttttagtgggtgagggtccagtgtttcacattg--tttatttgtatttgtgact 62

                                        
Query: 72  agatccacactcattaataacggtagttc 100
           ||||||||||||||||| |||||||||||
Sbjct: 63  agatccacactcattaaaaacggtagttc 91




>36796_dmo-mir-279:mirbase
          Length = 93

 Score =  121 bits (61), Expect = 1e-28
 Identities = 87/93 (93%), Gaps = 2/93 (2%)
 Strand = Plus / Plus

                                                                       
Query: 9   tactactgtttttagtgggtgggggtccagtgtttcacattgattttctta-gtatttgt 67
           ||||||||||||||||| ||| |||||||||||||||||||| ||| |||| ||||||||
Sbjct: 2   tactactgtttttagtgagtgagggtccagtgtttcacattg-tttgcttaagtatttgt 60

                                            
Query: 68  gactagatccacactcattaataacggtagttc 100
           ||||||||||||||||||||| |||||||||||
Sbjct: 61  gactagatccacactcattaaaaacggtagttc 93




>37373_dvi-mir-279:mirbase
          Length = 94

 Score =  113 bits (57), Expect = 2e-26
 Identities = 85/93 (91%), Gaps = 1/93 (1%)
 Strand = Plus / Plus

                                                                       
Query: 9   tactactgtttttagtgggtgggggtccagtgtttcacattgattttctta-gtatttgt 67
           ||||||||||||||||| ||| |||||||||||||||||||  |||| | | ||||||||
Sbjct: 2   tactactgtttttagtgagtgagggtccagtgtttcacattcgttttttcaagtatttgt 61

                                            
Query: 68  gactagatccacactcattaataacggtagttc 100
           ||||||||||||||||||||| |||||||||||
Sbjct: 62  gactagatccacactcattaacaacggtagttc 94




>35304_aga-mir-279:mirbase
          Length = 89

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 64 ttgtgactagatccacactcattaat 89
          ||||||||||||||||||||||||||
Sbjct: 53 ttgtgactagatccacactcattaat 78




>35383_ame-mir-279:mirbase
          Length = 100

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 64 ttgtgactagatccacactcattaa 88
          |||||||||||||||||||||||||
Sbjct: 64 ttgtgactagatccacactcattaa 88




>35209_aae-mir-279:mirbase
          Length = 95

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 65 tgtgactagatccacactcattaa 88
          ||||||||||||||||||||||||
Sbjct: 59 tgtgactagatccacactcattaa 82




>36037_cqu-mir-279:mirbase
          Length = 73

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 65 tgtgactagatccacactcattaa 88
          ||||||||||||||||||||||||
Sbjct: 47 tgtgactagatccacactcattaa 70




>37662_nvi-mir-279:mirbase
          Length = 100

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 65 tgtgactagatccacactcattaa 88
          ||||||||||||||||||||||||
Sbjct: 65 tgtgactagatccacactcattaa 88




>37771_tca-mir-279a:mirbase
          Length = 65

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 66 gtgactagatccacactcattaa 88
          |||||||||||||||||||||||
Sbjct: 42 gtgactagatccacactcattaa 64




>37772_tca-mir-279a:mirbase
          Length = 65

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 66 gtgactagatccacactcattaa 88
          |||||||||||||||||||||||
Sbjct: 42 gtgactagatccacactcattaa 64