miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37169_dse-mir-288:mirbase
Length = 97
Score = 176 bits (89), Expect = 2e-45
Identities = 92/93 (98%)
Strand = Plus / Plus
Query: 5 catgtcgtaattagcggagcacggcatcgccggcgataattaatgacggtggtcacgttg 64
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5 catgtcgtaattagcggagcacggcattgccggcgataattaatgacggtggtcacgttg 64
Query: 65 gtttcatgtcgatttcatttcatgacacggccg 97
|||||||||||||||||||||||||||||||||
Sbjct: 65 gtttcatgtcgatttcatttcatgacacggccg 97
>37245_dsi-mir-288:mirbase
Length = 97
Score = 176 bits (89), Expect = 2e-45
Identities = 92/93 (98%)
Strand = Plus / Plus
Query: 5 catgtcgtaattagcggagcacggcatcgccggcgataattaatgacggtggtcacgttg 64
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5 catgtcgtaattagcggagcacggcattgccggcgataattaatgacggtggtcacgttg 64
Query: 65 gtttcatgtcgatttcatttcatgacacggccg 97
|||||||||||||||||||||||||||||||||
Sbjct: 65 gtttcatgtcgatttcatttcatgacacggccg 97
>37538_dya-mir-288:mirbase
Length = 96
Score = 167 bits (84), Expect = 2e-42
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 5 catgtcgtaattagcggagcacggcatcgccggcgataattaatgacggtggtcacgttg 64
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 5 catgtcgtaattagcggagcacggcgttgccggcgataattaatgacggtggtcacgttg 64
Query: 65 gtttcatgtcgatttcatttcatgacacggcc 96
||||||||||||||||||||||||||||||||
Sbjct: 65 gtttcatgtcgatttcatttcatgacacggcc 96
>36209_der-mir-288:mirbase
Length = 97
Score = 153 bits (77), Expect = 3e-38
Identities = 89/93 (95%)
Strand = Plus / Plus
Query: 5 catgtcgtaattagcggagcacggcatcgccggcgataattaatgacggtggtcacgttg 64
|||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||
Sbjct: 5 catgtcgtaattagcggagctcggcgttgccggcgataattaatgacggtggtcacgttg 64
Query: 65 gtttcatgtcgatttcatttcatgacacggccg 97
|||||||||||||||||||||| ||||||||||
Sbjct: 65 gtttcatgtcgatttcatttcaggacacggccg 97
>36131_dan-mir-288:mirbase
Length = 92
Score = 135 bits (68), Expect = 6e-33
Identities = 86/92 (93%)
Strand = Plus / Plus
Query: 5 catgtcgtaattagcggagcacggcatcgccggcgataattaatgacggtggtcacgttg 64
||||||||||||||| | |||| | || |||||||||||||||||||| |||||||||||
Sbjct: 1 catgtcgtaattagcagggcacagaattgccggcgataattaatgacgttggtcacgttg 60
Query: 65 gtttcatgtcgatttcatttcatgacacggcc 96
||||||||||||||||||||||||||||||||
Sbjct: 61 gtttcatgtcgatttcatttcatgacacggcc 92
>36963_dps-mir-288:mirbase
Length = 96
Score = 135 bits (68), Expect = 6e-33
Identities = 89/96 (92%)
Strand = Plus / Plus
Query: 2 ggccatgtcgtaattagcggagcacggcatcgccggcgataattaatgacggtggtcacg 61
|||||||||||||||||| | | || || | |||||||||||||||||||| ||||||||
Sbjct: 1 ggccatgtcgtaattagcagggtacagcgttgccggcgataattaatgacgttggtcacg 60
Query: 62 ttggtttcatgtcgatttcatttcatgacacggccg 97
||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttggtttcatgtcgatttcatttcatgacacggccg 96
>36882_dpe-mir-288:mirbase
Length = 96
Score = 127 bits (64), Expect = 2e-30
Identities = 88/96 (91%)
Strand = Plus / Plus
Query: 2 ggccatgtcgtaattagcggagcacggcatcgccggcgataattaatgacggtggtcacg 61
|||||||||||||||||| | | || || | |||||||| ||||||||||| ||||||||
Sbjct: 1 ggccatgtcgtaattagcagggtacagcgttgccggcgaaaattaatgacgttggtcacg 60
Query: 62 ttggtttcatgtcgatttcatttcatgacacggccg 97
||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttggtttcatgtcgatttcatttcatgacacggccg 96
>36806_dmo-mir-288:mirbase
Length = 96
Score = 123 bits (62), Expect = 2e-29
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 8 gtcgtaattagcggagcacggcatcgccggcgataattaatgacggtggtcacgttggtt 67
|||||||||||| | |||| || | || ||||||||||||||||| ||||||||||||||
Sbjct: 7 gtcgtaattagctgtgcacagcgttgctggcgataattaatgacgttggtcacgttggtt 66
Query: 68 tcatgtcgatttcatttcatgacacggccg 97
||||||||||||||||||||||||||||||
Sbjct: 67 tcatgtcgatttcatttcatgacacggccg 96
>37462_dwi-mir-288:mirbase
Length = 94
Score = 117 bits (59), Expect = 2e-27
Identities = 62/63 (98%)
Strand = Plus / Plus
Query: 35 cggcgataattaatgacggtggtcacgttggtttcatgtcgatttcatttcatgacacgg 94
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 32 cggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacgg 91
Query: 95 ccg 97
|||
Sbjct: 92 ccg 94
>36300_dgr-mir-288:mirbase
Length = 96
Score = 115 bits (58), Expect = 6e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 36 ggcgataattaatgacggtggtcacgttggtttcatgtcgatttcatttcatgacacggc 95
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35 ggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacggc 94
Query: 96 cg 97
||
Sbjct: 95 cg 96
>37383_dvi-mir-288:mirbase
Length = 97
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 36 ggcgataattaatgacggtggtcacgttggtttcatgtcgatttcatttcatgacacggc 95
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36 ggcgataattaatgactttggtcacgttggtttcatgtcgatttcatttcatgacacggc 95
Query: 96 cg 97
||
Sbjct: 96 cg 97
