miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36443_dme-mir-304:mirbase
          Length = 88

 Score =  174 bits (88), Expect = 7e-45
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcagcattgaataatctcaatttgtaaatgtgagcggtttaagccatttgacgcactcac 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gcagcattgaataatctcaatttgtaaatgtgagcggtttaagccatttgacgcactcac 60

                                      
Query: 61 tttgcaattggagattgctcgagactgc 88
          ||||||||||||||||||||||||||||
Sbjct: 61 tttgcaattggagattgctcgagactgc 88




>36211_der-mir-304:mirbase
          Length = 88

 Score =  167 bits (84), Expect = 2e-42
 Identities = 87/88 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcagcattgaataatctcaatttgtaaatgtgagcggtttaagccatttgacgcactcac 60
          |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1  gcagcattgaataatctcaatttgtaaatgtgagcggtttgagccatttgacgcactcac 60

                                      
Query: 61 tttgcaattggagattgctcgagactgc 88
          ||||||||||||||||||||||||||||
Sbjct: 61 tttgcaattggagattgctcgagactgc 88




>37171_dse-mir-304:mirbase
          Length = 88

 Score =  167 bits (84), Expect = 2e-42
 Identities = 87/88 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcagcattgaataatctcaatttgtaaatgtgagcggtttaagccatttgacgcactcac 60
          |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1  gcagcattgaataatctcaatttgtaaatgtgagcggtttgagccatttgacgcactcac 60

                                      
Query: 61 tttgcaattggagattgctcgagactgc 88
          ||||||||||||||||||||||||||||
Sbjct: 61 tttgcaattggagattgctcgagactgc 88




>37248_dsi-mir-304:mirbase
          Length = 88

 Score =  167 bits (84), Expect = 2e-42
 Identities = 87/88 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcagcattgaataatctcaatttgtaaatgtgagcggtttaagccatttgacgcactcac 60
          |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1  gcagcattgaataatctcaatttgtaaatgtgagcggtttgagccatttgacgcactcac 60

                                      
Query: 61 tttgcaattggagattgctcgagactgc 88
          ||||||||||||||||||||||||||||
Sbjct: 61 tttgcaattggagattgctcgagactgc 88




>37540_dya-mir-304:mirbase
          Length = 88

 Score =  167 bits (84), Expect = 2e-42
 Identities = 87/88 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcagcattgaataatctcaatttgtaaatgtgagcggtttaagccatttgacgcactcac 60
          |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1  gcagcattgaataatctcaatttgtaaatgtgagcggtttgagccatttgacgcactcac 60

                                      
Query: 61 tttgcaattggagattgctcgagactgc 88
          ||||||||||||||||||||||||||||
Sbjct: 61 tttgcaattggagattgctcgagactgc 88




>36133_dan-mir-304:mirbase
          Length = 88

 Score =  143 bits (72), Expect = 2e-35
 Identities = 84/88 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcagcattgaataatctcaatttgtaaatgtgagcggtttaagccatttgacgcactcac 60
          |||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||
Sbjct: 1  gcagcattgaataatctcaatttgtaaatgtgagcgatttgagccatttgacggactcac 60

                                      
Query: 61 tttgcaattggagattgctcgagactgc 88
          ||||||| ||||||||||||||||||||
Sbjct: 61 tttgcaactggagattgctcgagactgc 88




>36965_dps-mir-304:mirbase
          Length = 88

 Score =  127 bits (64), Expect = 1e-30
 Identities = 82/88 (93%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcagcattgaataatctcaatttgtaaatgtgagcggtttaagccatttgacgcactcac 60
          |||||||||||||||||||||||||||||||||||| ||| || |||||||| |||||||
Sbjct: 1  gcagcattgaataatctcaatttgtaaatgtgagcgatttgaggcatttgacacactcac 60

                                      
Query: 61 tttgcaattggagattgctcgagactgc 88
          ||||||| |||||||||||||| |||||
Sbjct: 61 tttgcaactggagattgctcgaaactgc 88




>36807_dmo-mir-304:mirbase
          Length = 89

 Score =  121 bits (61), Expect = 9e-29
 Identities = 83/89 (93%), Gaps = 1/89 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcagcattgaataatctcaatttgtaaatgtgagcggttta-agccatttgacgcactca 59
          |||||||||| ||||||||||||||||||||||||| |||  | | ||||||||||||||
Sbjct: 1  gcagcattgattaatctcaatttgtaaatgtgagcgatttttaactatttgacgcactca 60

                                       
Query: 60 ctttgcaattggagattgctcgagactgc 88
          |||||||||||||||||||||||||||||
Sbjct: 61 ctttgcaattggagattgctcgagactgc 89




>36301_dgr-mir-304:mirbase
          Length = 89

 Score =  117 bits (59), Expect = 1e-27
 Identities = 81/86 (94%), Gaps = 3/86 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcagcattgaataatctcaatttgtaaatgtgagcggtt--taagccatttgacgcactc 58
          |||||||||||||||||||||||||||||||||||| ||  ||||  |||||||||||||
Sbjct: 1  gcagcattgaataatctcaatttgtaaatgtgagcgattattaaga-atttgacgcactc 59

                                    
Query: 59 actttgcaattggagattgctcgaga 84
          ||||||||||||||||||||||||||
Sbjct: 60 actttgcaattggagattgctcgaga 85




>37384_dvi-mir-304:mirbase
          Length = 89

 Score =  113 bits (57), Expect = 2e-26
 Identities = 79/85 (92%), Gaps = 1/85 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcagcattgaataatctcaatttgtaaatgtgagcggttt-aagccatttgacgcactca 59
          |||||||||| ||||||||||||||||||||||||| ||| ||   ||||||||||||||
Sbjct: 1  gcagcattgattaatctcaatttgtaaatgtgagcgattttaaagtatttgacgcactca 60

                                   
Query: 60 ctttgcaattggagattgctcgaga 84
          |||||||||||||||||||||||||
Sbjct: 61 ctttgcaattggagattgctcgaga 85




>37463_dwi-mir-304:mirbase
          Length = 89

 Score =  105 bits (53), Expect = 5e-24
 Identities = 75/81 (92%), Gaps = 1/81 (1%)
 Strand = Plus / Plus

                                                                      
Query: 5  cattgaataatctcaatttgtaaatgtgagcggtttaag-ccatttgacgcactcacttt 63
          |||||| ||||||||||||||||||||||||| |||||  ||||| || |||||||||||
Sbjct: 5  cattgattaatctcaatttgtaaatgtgagcgatttaaatccattcgatgcactcacttt 64

                               
Query: 64 gcaattggagattgctcgaga 84
          |||||||||||||||||||||
Sbjct: 65 gcaattggagattgctcgaga 85