miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36136_dan-mir-307:mirbase
          Length = 88

 Score =  174 bits (88), Expect = 7e-45
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtcttgctttgactcactcaacctgggtgtgatgttatttcgatatggtatccatcaca 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgtcttgctttgactcactcaacctgggtgtgatgttatttcgatatggtatccatcaca 60

                                      
Query: 61 acctccttgagtgagcgatagcaggaca 88
          ||||||||||||||||||||||||||||
Sbjct: 61 acctccttgagtgagcgatagcaggaca 88




>36214_der-mir-307:mirbase
          Length = 88

 Score =  174 bits (88), Expect = 7e-45
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtcttgctttgactcactcaacctgggtgtgatgttatttcgatatggtatccatcaca 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgtcttgctttgactcactcaacctgggtgtgatgttatttcgatatggtatccatcaca 60

                                      
Query: 61 acctccttgagtgagcgatagcaggaca 88
          ||||||||||||||||||||||||||||
Sbjct: 61 acctccttgagtgagcgatagcaggaca 88




>36450_dme-mir-307a:mirbase
          Length = 88

 Score =  174 bits (88), Expect = 7e-45
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtcttgctttgactcactcaacctgggtgtgatgttatttcgatatggtatccatcaca 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgtcttgctttgactcactcaacctgggtgtgatgttatttcgatatggtatccatcaca 60

                                      
Query: 61 acctccttgagtgagcgatagcaggaca 88
          ||||||||||||||||||||||||||||
Sbjct: 61 acctccttgagtgagcgatagcaggaca 88




>36451_dme-mir-307b:mirbase
          Length = 120

 Score =  174 bits (88), Expect = 7e-45
 Identities = 88/88 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcttgctttgactcactcaacctgggtgtgatgttatttcgatatggtatccatcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 tgtcttgctttgactcactcaacctgggtgtgatgttatttcgatatggtatccatcaca 46

                                       
Query: 61  acctccttgagtgagcgatagcaggaca 88
           ||||||||||||||||||||||||||||
Sbjct: 45  acctccttgagtgagcgatagcaggaca 18




>36452_dme-mir-307b:mirbase
          Length = 120

 Score =  174 bits (88), Expect = 7e-45
 Identities = 88/88 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcttgctttgactcactcaacctgggtgtgatgttatttcgatatggtatccatcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 tgtcttgctttgactcactcaacctgggtgtgatgttatttcgatatggtatccatcaca 46

                                       
Query: 61  acctccttgagtgagcgatagcaggaca 88
           ||||||||||||||||||||||||||||
Sbjct: 45  acctccttgagtgagcgatagcaggaca 18




>37174_dse-mir-307:mirbase
          Length = 88

 Score =  174 bits (88), Expect = 7e-45
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtcttgctttgactcactcaacctgggtgtgatgttatttcgatatggtatccatcaca 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgtcttgctttgactcactcaacctgggtgtgatgttatttcgatatggtatccatcaca 60

                                      
Query: 61 acctccttgagtgagcgatagcaggaca 88
          ||||||||||||||||||||||||||||
Sbjct: 61 acctccttgagtgagcgatagcaggaca 88




>37250_dsi-mir-307:mirbase
          Length = 88

 Score =  174 bits (88), Expect = 7e-45
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtcttgctttgactcactcaacctgggtgtgatgttatttcgatatggtatccatcaca 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgtcttgctttgactcactcaacctgggtgtgatgttatttcgatatggtatccatcaca 60

                                      
Query: 61 acctccttgagtgagcgatagcaggaca 88
          ||||||||||||||||||||||||||||
Sbjct: 61 acctccttgagtgagcgatagcaggaca 88




>37543_dya-mir-307:mirbase
          Length = 88

 Score =  174 bits (88), Expect = 7e-45
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtcttgctttgactcactcaacctgggtgtgatgttatttcgatatggtatccatcaca 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgtcttgctttgactcactcaacctgggtgtgatgttatttcgatatggtatccatcaca 60

                                      
Query: 61 acctccttgagtgagcgatagcaggaca 88
          ||||||||||||||||||||||||||||
Sbjct: 61 acctccttgagtgagcgatagcaggaca 88




>36886_dpe-mir-307:mirbase
          Length = 88

 Score =  170 bits (86), Expect = 1e-43
 Identities = 86/86 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtcttgctttgactcactcaacctgggtgtgatgttatttcgatatggtatccatcaca 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgtcttgctttgactcactcaacctgggtgtgatgttatttcgatatggtatccatcaca 60

                                    
Query: 61 acctccttgagtgagcgatagcagga 86
          ||||||||||||||||||||||||||
Sbjct: 61 acctccttgagtgagcgatagcagga 86




>36968_dps-mir-307a:mirbase
          Length = 88

 Score =  170 bits (86), Expect = 1e-43
 Identities = 86/86 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtcttgctttgactcactcaacctgggtgtgatgttatttcgatatggtatccatcaca 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgtcttgctttgactcactcaacctgggtgtgatgttatttcgatatggtatccatcaca 60

                                    
Query: 61 acctccttgagtgagcgatagcagga 86
          ||||||||||||||||||||||||||
Sbjct: 61 acctccttgagtgagcgatagcagga 86




>36969_dps-mir-307b:mirbase
          Length = 85

 Score =  168 bits (85), Expect = 4e-43
 Identities = 85/85 (100%)
 Strand = Plus / Minus

                                                                      
Query: 2  gtcttgctttgactcactcaacctgggtgtgatgttatttcgatatggtatccatcacaa 61
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 gtcttgctttgactcactcaacctgggtgtgatgttatttcgatatggtatccatcacaa 26

                                   
Query: 62 cctccttgagtgagcgatagcagga 86
          |||||||||||||||||||||||||
Sbjct: 25 cctccttgagtgagcgatagcagga 1




>36304_dgr-mir-307:mirbase
          Length = 88

 Score =  163 bits (82), Expect = 3e-41
 Identities = 85/86 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtcttgctttgactcactcaacctgggtgtgatgttatttcgatatggtatccatcaca 60
          ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1  tgtcttgctttgactcactcaacctgggtgtgatgttatttcgatttggtatccatcaca 60

                                    
Query: 61 acctccttgagtgagcgatagcagga 86
          ||||||||||||||||||||||||||
Sbjct: 61 acctccttgagtgagcgatagcagga 86




>36810_dmo-mir-307:mirbase
          Length = 88

 Score =  155 bits (78), Expect = 6e-39
 Identities = 84/86 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtcttgctttgactcactcaacctgggtgtgatgttatttcgatatggtatccatcaca 60
          |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 1  tgtcttgctttgactcactcaacctgggtgtgatgttatttcgattcggtatccatcaca 60

                                    
Query: 61 acctccttgagtgagcgatagcagga 86
          ||||||||||||||||||||||||||
Sbjct: 61 acctccttgagtgagcgatagcagga 86




>37387_dvi-mir-307:mirbase
          Length = 88

 Score =  155 bits (78), Expect = 6e-39
 Identities = 84/86 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtcttgctttgactcactcaacctgggtgtgatgttatttcgatatggtatccatcaca 60
          |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 1  tgtcttgctttgactcactcaacctgggtgtgatgttagttcgatttggtatccatcaca 60

                                    
Query: 61 acctccttgagtgagcgatagcagga 86
          ||||||||||||||||||||||||||
Sbjct: 61 acctccttgagtgagcgatagcagga 86




>37467_dwi-mir-307:mirbase
          Length = 87

 Score =  135 bits (68), Expect = 6e-33
 Identities = 81/84 (96%), Gaps = 1/84 (1%)
 Strand = Plus / Plus

                                                                      
Query: 4  cttgctttgactcactcaacctgggtgtgatgttatttcga-tatggtatccatcacaac 62
          ||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||
Sbjct: 3  cttgctttgactcactcaacctgggtgtgatgttatttataatatggtatccatcacaac 62

                                  
Query: 63 ctccttgagtgagcgatagcagga 86
          ||||||||||||||||||||||||
Sbjct: 63 ctccttgagtgagcgatagcagga 86




>35564_bmo-mir-307:mirbase
          Length = 96

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 53 ccatcacaacctccttgagtgagcgat 79
          |||||||||||||||||||||||||||
Sbjct: 58 ccatcacaacctccttgagtgagcgat 84



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 13 actcactcaacctgggtgtgatgt 36
          ||||||||||||||||||||||||
Sbjct: 16 actcactcaacctgggtgtgatgt 39




>37790_tca-mir-307:mirbase
          Length = 68

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 11 tgactcactcaacctgggtgtgatgt 36
          ||||||||||||||||||||||||||
Sbjct: 3  tgactcactcaacctgggtgtgatgt 28



 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 53 ccatcacaacctccttgagtgagcga 78
          ||||||||||||||||||||||||||
Sbjct: 39 ccatcacaacctccttgagtgagcga 64




>37791_tca-mir-307:mirbase
          Length = 68

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 11 tgactcactcaacctgggtgtgatgt 36
          ||||||||||||||||||||||||||
Sbjct: 3  tgactcactcaacctgggtgtgatgt 28



 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 53 ccatcacaacctccttgagtgagcga 78
          ||||||||||||||||||||||||||
Sbjct: 39 ccatcacaacctccttgagtgagcga 64




>35220_aae-mir-307:mirbase
          Length = 91

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 54 catcacaacctccttgagtgagcga 78
          |||||||||||||||||||||||||
Sbjct: 56 catcacaacctccttgagtgagcga 80



 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 13 actcactcaacctgggtgtgatg 35
          |||||||||||||||||||||||
Sbjct: 22 actcactcaacctgggtgtgatg 44




>35311_aga-mir-307:mirbase
          Length = 98

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 54 catcacaacctccttgagtgagcga 78
          |||||||||||||||||||||||||
Sbjct: 54 catcacaacctccttgagtgagcga 78



 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 13 actcactcaacctgggtgtgatg 35
          |||||||||||||||||||||||
Sbjct: 20 actcactcaacctgggtgtgatg 42




>35391_ame-mir-307:mirbase
          Length = 133

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 12 gactcactcaacctgggtgtgatg 35
          ||||||||||||||||||||||||
Sbjct: 31 gactcactcaacctgggtgtgatg 54




>37567_lmi-mir-307:mirbase
          Length = 61

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 13 actcactcaacctgggtgtgatgt 36
          ||||||||||||||||||||||||
Sbjct: 1  actcactcaacctgggtgtgatgt 24



 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 56 tcacaacctccttgagtgagcga 78
          |||||||||||||||||||||||
Sbjct: 39 tcacaacctccttgagtgagcga 61




>34985_isc-mir-307:mirbase
          Length = 101

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 53 ccatcacaacctccttgagtgag 75
          |||||||||||||||||||||||
Sbjct: 58 ccatcacaacctccttgagtgag 80




>37667_nvi-mir-307:mirbase
          Length = 98

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 13 actcactcaacctgggtgtgatg 35
          |||||||||||||||||||||||
Sbjct: 20 actcactcaacctgggtgtgatg 42




>35083_api-mir-307-1:mirbase
          Length = 61

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 57 cacaacctccttgagtgagcga 78
          ||||||||||||||||||||||
Sbjct: 40 cacaacctccttgagtgagcga 61




>35084_api-mir-307-2:mirbase
          Length = 61

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 57 cacaacctccttgagtgagcga 78
          ||||||||||||||||||||||
Sbjct: 40 cacaacctccttgagtgagcga 61




>35030_dpu-mir-307:mirbase
          Length = 101

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 56 tcacaacctccttgagtgag 75
          ||||||||||||||||||||
Sbjct: 61 tcacaacctccttgagtgag 80