miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36456_dme-mir-309:mirbase
          Length = 69

 Score =  137 bits (69), Expect = 1e-33
 Identities = 69/69 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  attatacgacaaaccttgttcggttttgccaatttccaagccagcactgggtaaagtttg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  attatacgacaaaccttgttcggttttgccaatttccaagccagcactgggtaaagtttg 60

                   
Query: 61 tcctataat 69
          |||||||||
Sbjct: 61 tcctataat 69




>37176_dse-mir-309:mirbase
          Length = 69

 Score =  137 bits (69), Expect = 1e-33
 Identities = 69/69 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  attatacgacaaaccttgttcggttttgccaatttccaagccagcactgggtaaagtttg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  attatacgacaaaccttgttcggttttgccaatttccaagccagcactgggtaaagtttg 60

                   
Query: 61 tcctataat 69
          |||||||||
Sbjct: 61 tcctataat 69




>37252_dsi-mir-309:mirbase
          Length = 69

 Score =  137 bits (69), Expect = 1e-33
 Identities = 69/69 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  attatacgacaaaccttgttcggttttgccaatttccaagccagcactgggtaaagtttg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  attatacgacaaaccttgttcggttttgccaatttccaagccagcactgggtaaagtttg 60

                   
Query: 61 tcctataat 69
          |||||||||
Sbjct: 61 tcctataat 69




>36216_der-mir-309:mirbase
          Length = 69

 Score =  129 bits (65), Expect = 3e-31
 Identities = 68/69 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  attatacgacaaaccttgttcggttttgccaatttccaagccagcactgggtaaagtttg 60
          ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1  attatacgacaaaccttgttcggttttgccaatttcctagccagcactgggtaaagtttg 60

                   
Query: 61 tcctataat 69
          |||||||||
Sbjct: 61 tcctataat 69




>37545_dya-mir-309:mirbase
          Length = 69

 Score =  121 bits (61), Expect = 6e-29
 Identities = 67/69 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  attatacgacaaaccttgttcggttttgccaatttccaagccagcactgggtaaagtttg 60
          ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 1  attatacgacaaaccttgttctgttttgccaatttcctagccagcactgggtaaagtttg 60

                   
Query: 61 tcctataat 69
          |||||||||
Sbjct: 61 tcctataat 69




>36138_dan-mir-309:mirbase
          Length = 68

 Score =  113 bits (57), Expect = 2e-26
 Identities = 67/69 (97%), Gaps = 1/69 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  attatacgacaaaccttgttcggttttgccaatttccaagccagcactgggtaaagtttg 60
          ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 1  attatacgacaaaccttgttcggttttgccaatttcctag-cagcactgggtaaagtttg 59

                   
Query: 61 tcctataat 69
          |||||||||
Sbjct: 60 tcctataat 68




>36888_dpe-mir-309:mirbase
          Length = 68

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 59/69 (85%), Gaps = 1/69 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  attatacgacaaaccttgttcggttttgccaatttccaagccagcactgggtaaagtttg 60
          ||||||||| |||| |||||| |||||||||| || |  || |||||||||| |||||||
Sbjct: 1  attatacgataaactttgttcagttttgccaacttgcttgc-agcactgggtgaagtttg 59

                   
Query: 61 tcctataat 69
          || ||||||
Sbjct: 60 tcttataat 68




>36971_dps-mir-309:mirbase
          Length = 68

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 59/69 (85%), Gaps = 1/69 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  attatacgacaaaccttgttcggttttgccaatttccaagccagcactgggtaaagtttg 60
          ||||||||| |||| |||||| |||||||||| || |  || |||||||||| |||||||
Sbjct: 1  attatacgataaactttgttcagttttgccaacttgcttgc-agcactgggtgaagtttg 59

                   
Query: 61 tcctataat 69
          || ||||||
Sbjct: 60 tcttataat 68