miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36459_dme-mir-311:mirbase
Length = 84
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 tctagatcatttttcggacggtatatgggttaatatttcatttgtcgaatatattgcaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctagatcatttttcggacggtatatgggttaatatttcatttgtcgaatatattgcaca 60
Query: 61 ttcaccggcctgaaaatatcaaga 84
||||||||||||||||||||||||
Sbjct: 61 ttcaccggcctgaaaatatcaaga 84
>37178_dse-mir-311:mirbase
Length = 84
Score = 111 bits (56), Expect = 8e-26
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 1 tctagatcatttttcggacggtatatgggttaatatttcatttgtcgaatatattgcaca 60
||||||| ||||||||||||||||||| || ||| ||| ||| ||||||||||||||||
Sbjct: 1 tctagataatttttcggacggtatatgagtcaatgttttctttttcgaatatattgcaca 60
Query: 61 ttcaccggcctgaaaatatcaaga 84
||||||||||||||||||||||||
Sbjct: 61 ttcaccggcctgaaaatatcaaga 84
>37254_dsi-mir-311:mirbase
Length = 86
Score = 109 bits (55), Expect = 3e-25
Identities = 79/86 (91%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 1 tctagatcatttttcggacggtatatgggttaatatttcatttgt--cgaatatattgca 58
||||||||||||||||||||||||||| || ||||||| ||| | |||||||||||||
Sbjct: 1 tctagatcatttttcggacggtatatgagtcaatattttttttttttcgaatatattgca 60
Query: 59 cattcaccggcctgaaaatatcaaga 84
||||||||||||||||||||||||||
Sbjct: 61 cattcaccggcctgaaaatatcaaga 86
>36219_der-mir-311a:mirbase
Length = 80
Score = 89.7 bits (45), Expect = 3e-19
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 10 tttttcggacggtatatgggttaatatttcatttgtcgaatatattgcacattcaccggc 69
||||||||||||||| || || |||||||| || | |||||||||||||||||||||||
Sbjct: 8 tttttcggacggtatctgcgtcaatatttccttgttagaatatattgcacattcaccggc 67
Query: 70 ctgaaaatatcaa 82
|||||||||||||
Sbjct: 68 ctgaaaatatcaa 80
>36222_der-mir-311c:mirbase
Length = 80
Score = 81.8 bits (41), Expect = 7e-17
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 10 tttttcggacggtatatgggttaatatttcatttgtcgaatatattgcacattcaccggc 69
||||||||||||||| || || |||||||| || | |||||||||||||||||||| ||
Sbjct: 8 tttttcggacggtatctgcgtcaatatttccttgttagaatatattgcacattcaccagc 67
Query: 70 ctgaaaatatcaa 82
|||||||||||||
Sbjct: 68 ctgaaaatatcaa 80
>37547_dya-mir-311a:mirbase
Length = 80
Score = 81.8 bits (41), Expect = 7e-17
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 10 tttttcggacggtatatgggttaatatttcatttgtcgaatatattgcacattcaccggc 69
|||| |||||||||| || || |||||||| || | |||||||||||||||||||||||
Sbjct: 8 ttttgcggacggtatctgcgtcaatatttccttgttagaatatattgcacattcaccggc 67
Query: 70 ctgaaaatatcaa 82
|||||||||||||
Sbjct: 68 ctgaaaatatcaa 80
