miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36462_dme-mir-312:mirbase
Length = 66
Score = 131 bits (66), Expect = 6e-32
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 1 gatttggttcgtcacaagggcaattctgcattttttaactagtattgcacttgagacggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatttggttcgtcacaagggcaattctgcattttttaactagtattgcacttgagacggc 60
Query: 61 ctgatt 66
||||||
Sbjct: 61 ctgatt 66
>37179_dse-mir-312:mirbase
Length = 66
Score = 101 bits (51), Expect = 6e-23
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 3 tttggttcgtcacaagggcaattctgcattttttaactagtattgcacttgagacggcc 61
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 3 tttggttcgtcacaagggcaattctgcatttttaaacttgtattgcacttgagacggcc 61
>37255_dsi-mir-312:mirbase
Length = 66
Score = 101 bits (51), Expect = 6e-23
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 3 tttggttcgtcacaagggcaattctgcattttttaactagtattgcacttgagacggcc 61
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 3 tttggttcgtcacaagggcaattctgcatttttaaacttgtattgcacttgagacggcc 61
>36223_der-mir-312-1:mirbase
Length = 66
Score = 69.9 bits (35), Expect = 2e-13
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 20 gcaattctgcattttttaactagtattgcacttgagacggcctgatt 66
|||||||||||||||| | ||||||||||||||||||||||| ||||
Sbjct: 20 gcaattctgcatttttaagctagtattgcacttgagacggccggatt 66
>36224_der-mir-312-2:mirbase
Length = 69
Score = 56.0 bits (28), Expect = 3e-09
Identities = 45/50 (90%), Gaps = 3/50 (6%)
Strand = Plus / Plus
Query: 20 gcaattctgcatttttt---aactagtattgcacttgagacggcctgatt 66
||||||||||||||||| | ||||||||||||||||||||||| ||||
Sbjct: 20 gcaattctgcattttttttaagctagtattgcacttgagacggccggatt 69
>37549_dya-mir-312:mirbase
Length = 67
Score = 52.0 bits (26), Expect = 5e-08
Identities = 54/62 (87%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 6 ggttcgtcacaagggcaattctgcattttttaa-ctagtattgcacttgagacggcctga 64
|||||||| || | ||||||||||| | || || ||||||||||||||||||||||| ||
Sbjct: 6 ggttcgtcccaggagcaattctgcactattaaagctagtattgcacttgagacggccgga 65
Query: 65 tt 66
||
Sbjct: 66 tt 67
>36142_dan-mir-312:mirbase
Length = 57
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 agtattgcacttgagacggcc 61
|||||||||||||||||||||
Sbjct: 37 agtattgcacttgagacggcc 57
