miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36461_dme-mir-312:mirbase
          Length = 66

 Score =  131 bits (66), Expect = 6e-32
 Identities = 66/66 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gatttggttcgtcacaagggcaattctgcattttttaactagtattgcacttgagacggc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gatttggttcgtcacaagggcaattctgcattttttaactagtattgcacttgagacggc 60

                
Query: 61 ctgatt 66
          ||||||
Sbjct: 61 ctgatt 66




>37179_dse-mir-312:mirbase
          Length = 66

 Score =  101 bits (51), Expect = 6e-23
 Identities = 57/59 (96%)
 Strand = Plus / Plus

                                                                     
Query: 3  tttggttcgtcacaagggcaattctgcattttttaactagtattgcacttgagacggcc 61
          ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 3  tttggttcgtcacaagggcaattctgcatttttaaacttgtattgcacttgagacggcc 61




>37255_dsi-mir-312:mirbase
          Length = 66

 Score =  101 bits (51), Expect = 6e-23
 Identities = 57/59 (96%)
 Strand = Plus / Plus

                                                                     
Query: 3  tttggttcgtcacaagggcaattctgcattttttaactagtattgcacttgagacggcc 61
          ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 3  tttggttcgtcacaagggcaattctgcatttttaaacttgtattgcacttgagacggcc 61




>36223_der-mir-312-1:mirbase
          Length = 66

 Score = 69.9 bits (35), Expect = 2e-13
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                         
Query: 20 gcaattctgcattttttaactagtattgcacttgagacggcctgatt 66
          |||||||||||||||| | ||||||||||||||||||||||| ||||
Sbjct: 20 gcaattctgcatttttaagctagtattgcacttgagacggccggatt 66




>36224_der-mir-312-2:mirbase
          Length = 69

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 45/50 (90%), Gaps = 3/50 (6%)
 Strand = Plus / Plus

                                                            
Query: 20 gcaattctgcatttttt---aactagtattgcacttgagacggcctgatt 66
          |||||||||||||||||   | ||||||||||||||||||||||| ||||
Sbjct: 20 gcaattctgcattttttttaagctagtattgcacttgagacggccggatt 69




>37549_dya-mir-312:mirbase
          Length = 67

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 54/62 (87%), Gaps = 1/62 (1%)
 Strand = Plus / Plus

                                                                      
Query: 6  ggttcgtcacaagggcaattctgcattttttaa-ctagtattgcacttgagacggcctga 64
          |||||||| || | ||||||||||| | || || ||||||||||||||||||||||| ||
Sbjct: 6  ggttcgtcccaggagcaattctgcactattaaagctagtattgcacttgagacggccgga 65

            
Query: 65 tt 66
          ||
Sbjct: 66 tt 67




>36142_dan-mir-312:mirbase
          Length = 57

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 41 agtattgcacttgagacggcc 61
          |||||||||||||||||||||
Sbjct: 37 agtattgcacttgagacggcc 57