miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36463_dme-mir-313:mirbase
          Length = 71

 Score = 99.6 bits (50), Expect = 2e-22
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                      
Query: 1  attttctgctgcggatgggggcagtactgnnnnnnnaacattgagtattgcacttttcac 60
          |||||||||||||||||||||||||||||       ||||||||||||||||||||||||
Sbjct: 1  attttctgctgcggatgggggcagtactgtttttttaacattgagtattgcacttttcac 60

                     
Query: 61 agcccgaaaat 71
          |||||||||||
Sbjct: 61 agcccgaaaat 71




>37180_dse-mir-313:mirbase
          Length = 66

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 40 attgagtattgcacttttcacagcc 64
          |||||||||||||||||||||||||
Sbjct: 37 attgagtattgcacttttcacagcc 61




>37256_dsi-mir-313:mirbase
          Length = 66

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 40 attgagtattgcacttttcacagcc 64
          |||||||||||||||||||||||||
Sbjct: 37 attgagtattgcacttttcacagcc 61




>36813_dmo-mir-313:mirbase
          Length = 66

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                     
Query: 44 agtattgcacttttcacagcccgaaaa 70
          ||||||||||||||||| ||| |||||
Sbjct: 40 agtattgcacttttcacggccggaaaa 66




>37391_dvi-mir-313:mirbase
          Length = 71

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                     
Query: 44 agtattgcacttttcacagcccgaaaa 70
          ||||||||||||||||| ||| |||||
Sbjct: 45 agtattgcacttttcacggccggaaaa 71