miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36472_dme-mir-317:mirbase
Length = 92
Score = 182 bits (92), Expect = 3e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1 atgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaac 60
Query: 61 acagctggtggtatccagtggccgtttggcat 92
||||||||||||||||||||||||||||||||
Sbjct: 61 acagctggtggtatccagtggccgtttggcat 92
>37184_dse-mir-317:mirbase
Length = 92
Score = 182 bits (92), Expect = 3e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1 atgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaac 60
Query: 61 acagctggtggtatccagtggccgtttggcat 92
||||||||||||||||||||||||||||||||
Sbjct: 61 acagctggtggtatccagtggccgtttggcat 92
>37260_dsi-mir-317:mirbase
Length = 92
Score = 182 bits (92), Expect = 3e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1 atgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaac 60
Query: 61 acagctggtggtatccagtggccgtttggcat 92
||||||||||||||||||||||||||||||||
Sbjct: 61 acagctggtggtatccagtggccgtttggcat 92
>36228_der-mir-317:mirbase
Length = 92
Score = 178 bits (90), Expect = 5e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 atgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaac 60
Query: 61 acagctggtggtatccagtggccgtttggc 90
||||||||||||||||||||||||||||||
Sbjct: 61 acagctggtggtatccagtggccgtttggc 90
>37555_dya-mir-317:mirbase
Length = 92
Score = 178 bits (90), Expect = 5e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 atgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaac 60
Query: 61 acagctggtggtatccagtggccgtttggc 90
||||||||||||||||||||||||||||||
Sbjct: 61 acagctggtggtatccagtggccgtttggc 90
>36146_dan-mir-317:mirbase
Length = 91
Score = 149 bits (75), Expect = 4e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 14 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 72
Query: 74 tccagtggccgtttggcat 92
|||||||||||||| ||||
Sbjct: 73 tccagtggccgttttgcat 91
>36892_dpe-mir-317-1:mirbase
Length = 90
Score = 121 bits (61), Expect = 9e-29
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 2 tgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaaca 61
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 tgcaactgccgttgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaaca 60
Query: 62 cagctggtggtatccagtggccgtt 86
|||||||||||||||| ||||||||
Sbjct: 61 cagctggtggtatccaatggccgtt 85
>36893_dpe-mir-317-2:mirbase
Length = 90
Score = 121 bits (61), Expect = 9e-29
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 2 tgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaaca 61
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 tgcaactgccgttgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaaca 60
Query: 62 cagctggtggtatccagtggccgtt 86
|||||||||||||||| ||||||||
Sbjct: 61 cagctggtggtatccaatggccgtt 85
>36976_dps-mir-317:mirbase
Length = 90
Score = 121 bits (61), Expect = 9e-29
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 2 tgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaaca 61
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 tgcaactgccgttgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaaca 60
Query: 62 cagctggtggtatccagtggccgtt 86
|||||||||||||||| ||||||||
Sbjct: 61 cagctggtggtatccaatggccgtt 85
>37473_dwi-mir-317:mirbase
Length = 85
Score = 121 bits (61), Expect = 9e-29
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 3 gcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacac 62
|||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 1 gcaactgccactgggatacaccctgtgctcgctttgaatattgtgcaaacaagtgaacac 60
Query: 63 agctggtggtatccagtggccgttt 87
|||||||||||||||||||||||||
Sbjct: 61 agctggtggtatccagtggccgttt 85
>37396_dvi-mir-317:mirbase
Length = 86
Score = 107 bits (54), Expect = 1e-24
Identities = 69/73 (94%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 14 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 73
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 13 tgggatacaccctgtgctcgctttgaattg--tgcaagcaagtgaacacagctggtggta 70
Query: 74 tccagtggccgtt 86
|||||||||||||
Sbjct: 71 tccagtggccgtt 83
>36311_dgr-mir-317:mirbase
Length = 90
Score = 95.6 bits (48), Expect = 5e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 23 ccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggtatccagtggc 82
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 23 ccctgtgctcgctttgaatattgtgtaagcaagtgaacacagctggtggtatccagtggc 82
Query: 83 cgtttggc 90
||||||||
Sbjct: 83 cgtttggc 90
>36817_dmo-mir-317:mirbase
Length = 86
Score = 65.9 bits (33), Expect = 5e-12
Identities = 65/73 (89%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 14 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 73
|||||||||||||||||||||||||| | | || |||||||||||||||||||||||
Sbjct: 13 tgggatacaccctgtgctcgctttgagttta-tgtt-gcaagtgaacacagctggtggta 70
Query: 74 tccagtggccgtt 86
||||| |||||||
Sbjct: 71 tccagaggccgtt 83
>35227_aae-mir-317-1:mirbase
Length = 92
Score = 50.1 bits (25), Expect = 3e-07
Identities = 60/70 (85%), Gaps = 5/70 (7%)
Strand = Plus / Plus
Query: 15 gggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggtat 74
|||||||||||||||||||||||| || | || | |||||||||||||||||||||
Sbjct: 18 gggatacaccctgtgctcgctttgcat----tcgaaactagtgaacacagctggtggtat 73
Query: 75 c-cagtggcc 83
| ||||||||
Sbjct: 74 ctcagtggcc 83
>35228_aae-mir-317-2:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 60/70 (85%), Gaps = 5/70 (7%)
Strand = Plus / Plus
Query: 15 gggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggtat 74
|||||||||||||||||||||||| || | || | |||||||||||||||||||||
Sbjct: 16 gggatacaccctgtgctcgctttgcat----tcgaaactagtgaacacagctggtggtat 71
Query: 75 c-cagtggcc 83
| ||||||||
Sbjct: 72 ctcagtggcc 81
>36047_cqu-mir-317:mirbase
Length = 92
Score = 50.1 bits (25), Expect = 3e-07
Identities = 60/70 (85%), Gaps = 5/70 (7%)
Strand = Plus / Plus
Query: 15 gggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggtat 74
|||||||||||||||||||||||| || | || | |||||||||||||||||||||
Sbjct: 18 gggatacaccctgtgctcgctttgcat----tcgaaactagtgaacacagctggtggtat 73
Query: 75 c-cagtggcc 83
| ||||||||
Sbjct: 74 ctcagtggcc 83
>35087_api-mir-317:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 agtgaacacagctggtggtatc 75
||||||||||||||||||||||
Sbjct: 55 agtgaacacagctggtggtatc 76
>35567_bmo-mir-317:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 agtgaacacagctggtggtatc 75
||||||||||||||||||||||
Sbjct: 53 agtgaacacagctggtggtatc 74
>37801_tca-mir-317:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 agtgaacacagctggtggtatc 75
||||||||||||||||||||||
Sbjct: 44 agtgaacacagctggtggtatc 65
>37802_tca-mir-317:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 agtgaacacagctggtggtatc 75
||||||||||||||||||||||
Sbjct: 44 agtgaacacagctggtggtatc 65
>38886_lgi-mir-317:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 gtgaacacagctggtggtatc 75
|||||||||||||||||||||
Sbjct: 60 gtgaacacagctggtggtatc 80
>38776_cte-mir-317:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 gtgaacacagctggtggtatc 75
|||||||||||||||||||||
Sbjct: 60 gtgaacacagctggtggtatc 80
>35032_dpu-mir-317:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 gtgaacacagctggtggtatc 75
|||||||||||||||||||||
Sbjct: 60 gtgaacacagctggtggtatc 80
>35394_ame-mir-317:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 gtgaacacagctggtggtatc 75
|||||||||||||||||||||
Sbjct: 54 gtgaacacagctggtggtatc 74
>37592_ngi-mir-317:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 gtgaacacagctggtggtatc 75
|||||||||||||||||||||
Sbjct: 51 gtgaacacagctggtggtatc 71
>37669_nvi-mir-317:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 gtgaacacagctggtggtatc 75
|||||||||||||||||||||
Sbjct: 54 gtgaacacagctggtggtatc 74
>34987_isc-mir-317:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 gtgaacacagctggtggtat 74
||||||||||||||||||||
Sbjct: 60 gtgaacacagctggtggtat 79
>35315_aga-mir-317:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 3e-04
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 54 agtgaacacagctggtggtatc-cagtggccg 84
|||||||||| ||||||||||| |||||||||
Sbjct: 54 agtgaacacatctggtggtatctcagtggccg 85
